View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1288_low_37 (Length: 311)

Name: NF1288_low_37
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1288_low_37
NF1288_low_37
[»] chr7 (2 HSPs)
chr7 (128-219)||(25128409-25128500)
chr7 (67-127)||(6668387-6668447)
[»] chr3 (3 HSPs)
chr3 (67-139)||(22808056-22808128)
chr3 (67-127)||(5495065-5495125)
chr3 (18-62)||(27182853-27182897)
[»] chr2 (1 HSPs)
chr2 (74-148)||(28969613-28969687)
[»] chr1 (1 HSPs)
chr1 (69-115)||(26450336-26450382)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 25128500 - 25128409
Alignment:
Q  128 ttttattgaactatttattttgtgcgtagatgactgcatattcggggttatgcgagttgacattggtcaaataaacaacttctttggttatg 219  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25128500 ttttattgaactattttttttgtgcgtagatgactgcatattcggggttatgcgagttgacattggtcaaataaactacttctttggttatg 25128409  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 6668387 - 6668447
Alignment:
Q  67 atttttggtgacttgtttaattctaatagatatatcagataaaatcacatatatgtccaat 127  Q
    ||||||||| | ||||||| |||| |||||| ||||||| ||||||||| |||||||||||    
T  6668387 atttttggtaagttgtttatttcttatagatgtatcagagaaaatcacacatatgtccaat 6668447  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 22808056 - 22808128
Alignment:
Q  67 atttttggtgacttgtttaattctaatagatatatcagataaaatcacatatatgtccaatttttattgaact 139  Q
    ||||||||||| ||||||| |||||||| |||||||||| |||||| |||||||||| |||||| ||||||||    
T  22808056 atttttggtgagttgtttatttctaataaatatatcagagaaaatcgcatatatgtctaattttaattgaact 22808128  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 5495065 - 5495125
Alignment:
Q  67 atttttggtgacttgtttaattctaatagatatatcagataaaatcacatatatgtccaat 127  Q
    |||||| |||| |||||||||||| ||||||||| |||| |||||| ||||||||||||||    
T  5495065 atttttagtgagttgtttaattcttatagatataacagagaaaatcgcatatatgtccaat 5495125  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27182853 - 27182897
Alignment:
Q  18 ttttcaattttcttatgagaaaaaactgtctcccgatgatgttac 62  Q
    |||||||||||| || |||||||||||||||||  ||||||||||    
T  27182853 ttttcaattttcctacgagaaaaaactgtctccatatgatgttac 27182897  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 28969613 - 28969687
Alignment:
Q  74 gtgacttgtttaattctaatagatatatcagataaaatcacatatatgtccaatttttattgaactatttatttt 148  Q
    |||| |||||||||||| |||||||||||||| ||||  ||||||||| | |||||||||| |||| ||| ||||    
T  28969613 gtgagttgtttaattcttatagatatatcagaaaaaagtacatatatgcctaatttttattaaactgtttttttt 28969687  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 26450382 - 26450336
Alignment:
Q  69 ttttggtgacttgtttaattctaatagatatatcagataaaatcaca 115  Q
    ||||||| | |||||||||||| |||||||||||||| |||||||||    
T  26450382 ttttggttagttgtttaattcttatagatatatcagagaaaatcaca 26450336  T

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