View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_38 (Length: 298)
Name: NF1288_low_38
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 45306365 - 45306247
Alignment:
| Q |
105 |
ccgtcgttctagagtggtaacaaaggaatcaaacctcaaccacaaacacacacaaaactagtacatttaagagagtnnnnnnntaacagcaattacaagt |
204 |
Q |
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| T |
45306365 |
ccgtcgttctagagtggtaacaaaggaatcaaacctcaacc----acacacacaaaactagtacatttaagagagtaaaaaaataacagcaattacaagt |
45306270 |
T |
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| Q |
205 |
atgaaggttagaaaaatgttggt |
227 |
Q |
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|||||| |||||||||||||||| |
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| T |
45306269 |
atgaagattagaaaaatgttggt |
45306247 |
T |
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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 779518 - 779566
Alignment:
| Q |
246 |
aacgatgagaattccggggttgggacggagaagaaggatggggaaagtg |
294 |
Q |
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| T |
779518 |
aacgatgagaagtccggggttgggacggagaagaaggatggggaaagtg |
779566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 32916135 - 32916095
Alignment:
| Q |
3 |
caagcacctcaaaaacaataagctgccactaacaaccccat |
43 |
Q |
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| T |
32916135 |
caagcacctcaaaaacaataagctgccactaacaaccccat |
32916095 |
T |
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