View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_40 (Length: 293)
Name: NF1288_low_40
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 48183655 - 48183491
Alignment:
| Q |
98 |
ggagggagtatgtgtattaagtttggtcccacaaagtgcaaagcagtactactactgggtcatgcaagaagatataatgaaccacgtaggtacaatatgg |
197 |
Q |
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| T |
48183655 |
ggagggagtatgtgtattaagtttggtcccacaaactgcaaagcagtactactactgggtcatgcaagaagatataatgaaccacgtaggtacaatatgg |
48183556 |
T |
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| Q |
198 |
aaacaggaattcattgatttaagagtgaatatgaaagacagaggtttgaaagtcacggtctgtgg |
262 |
Q |
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| T |
48183555 |
aaacaggaattcattgatttaagagtgaatatgaaagacaaaggtttgaaagtcacggtttgtgg |
48183491 |
T |
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