View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_42 (Length: 286)
Name: NF1288_low_42
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 254
Target Start/End: Complemental strand, 1814378 - 1814212
Alignment:
| Q |
87 |
tgaggggacaaggacaatttctagtttcagtttattgcttaactcaccaattttggaatataacagtggattagcatataagtgagcatatcaaagcacn |
186 |
Q |
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| T |
1814378 |
tgaggggacaaggacaatttctagttgcagtttattgcttaactcaccaatgttggaatataacagtggattagcatataagtgagcatatcaaagcac- |
1814280 |
T |
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| Q |
187 |
nnnnnnnnggagtttataaaaaagataacaaccaaccacaagtcacctatgaagcacgtacacaaaca |
254 |
Q |
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| T |
1814279 |
aaaaaaaaggagtttataaaaaagataacaaccaaccacaagtcacctatgaagcgcatacacaaaca |
1814212 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 1829526 - 1829467
Alignment:
| Q |
200 |
ttataaaaaagataacaaccaaccacaagtcacc----tatgaagcacgtacacaaacac |
255 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
1829526 |
ttataacaaagataacaaccaaccacaagtcacctatatatgaagcacatacacaaacac |
1829467 |
T |
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