View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1288_low_44 (Length: 284)

Name: NF1288_low_44
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1288_low_44
NF1288_low_44
[»] chr7 (5 HSPs)
chr7 (16-266)||(28117269-28117519)
chr7 (170-263)||(30284315-30284409)
chr7 (127-202)||(28117221-28117297)
chr7 (29-208)||(38947452-38947632)
chr7 (187-263)||(45266756-45266834)
[»] chr1 (2 HSPs)
chr1 (125-240)||(11803114-11803229)
chr1 (125-213)||(15826427-15826518)
[»] chr3 (2 HSPs)
chr3 (121-220)||(43263802-43263902)
chr3 (175-240)||(22850933-22850998)
[»] chr6 (2 HSPs)
chr6 (53-263)||(12479233-12479444)
chr6 (104-187)||(5720608-5720692)
[»] chr5 (2 HSPs)
chr5 (115-224)||(34835278-34835388)
chr5 (153-240)||(11713177-11713264)
[»] chr8 (2 HSPs)
chr8 (121-259)||(27823147-27823286)
chr8 (147-224)||(35199741-35199818)
[»] chr4 (2 HSPs)
chr4 (104-259)||(45685745-45685903)
chr4 (168-212)||(9779392-9779436)
[»] chr2 (1 HSPs)
chr2 (184-263)||(34396502-34396582)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 28117519 - 28117269
Alignment:
Q  16 atatatatggaacatgatcaattgacatcgcggtgtcaaacttaatatatgacaaatatgataattctttatcgtgtaatcgtattgtaaaattgattgt 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28117519 atatatatggaacatgatcaattgatatcgcggtgtcaaacttaatatatgacaaatatgataattctttatcgtgtaatcgtattgtaaaactgattgt 28117420  T
Q  116 tgaactgaaagatattataatatagatcatgttatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaat 215  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28117419 tggactgaaagatattataatatagatcatgctatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaat 28117320  T
Q  216 gaacttttagaaaacgagttaatttgatgtatcttattgacatatcaattt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28117319 gaacttttagaaaacgagttaatttgatgtatcttattgacatatcaattt 28117269  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 30284315 - 30284409
Alignment:
Q  170 atataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaacttttagaaaacgagttaa-tttgatgtatcttattgacatatcaa 263  Q
    |||| ||||||||||| ||| |||| | | |||||||| |||| ||||||||||| ||||| |||||| ||| | |||||||||| |||||||||    
T  30284315 atatcatttgatatgttaattaaatacgttaaaattaaagtcttatgaacttttaaaaaacaagttaattttaacgtatcttattcacatatcaa 30284409  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 28117221 - 28117297
Alignment:
Q  127 atattataatatagatcatgt-tatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaa 202  Q
    ||||||||| ||||||||||| |||| ||||||| |||||||| | |||| ||||||||||||| | || |||||||    
T  28117221 atattataacatagatcatgtatataaaatttgatatttatcgaaaataaattgatatgtcaataagatacatcaaa 28117297  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 38947452 - 38947632
Alignment:
Q  29 atgatcaattgacatcgcggtgtcaaacttaatatatgacaaatatgataattctttatcgtgtaatcgtattgtaaaattgattgttgaactgaaagat 128  Q
    ||||||||  |||| || ||| ||||| |||||||||||||   ||||||||| ||||| ||  ||   ||||  |||||||| ||||| | ||||||||    
T  38947452 atgatcaacggacaccgtggtttcaaatttaatatatgacatcgatgataattatttattgtagaactatattacaaaattgactgttggattgaaagat 38947551  T
Q  129 attataatatagatcatgt-tatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaac 208  Q
    |||| || ||||||||||| |||| ||||| ||||| | ||||    ||||||||||||||| | ||  ||||||||||||    
T  38947552 attaaaacatagatcatgtgtataaaattttacattaaccggaagccatttgatatgtcaattagataaatcaaaattaac 38947632  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 45266834 - 45266756
Alignment:
Q  187 aatgaaatgcatcaaaattaacgtctaatgaacttttagaaaa--cgagttaattt-gatgtatcttattgacatatcaa 263  Q
    |||||||| ||||||||||| |||||| | ||||||| |||||  | | ||||||| |||||||||||||||||||||||    
T  45266834 aatgaaatacatcaaaattagcgtcta-taaactttttgaaaaaacaaattaattttgatgtatcttattgacatatcaa 45266756  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 11803229 - 11803114
Alignment:
Q  125 agatattataatatagatcat-gt-tatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaacttt 222  Q
    ||||||||||||||||||| | || |||| ||||||||||| |||| | |||| ||||| ||||||||| |||||||||||||||||||| || ||  ||    
T  11803229 agatattataatatagatctttgtatataaaatttgacattaatcgaaaataagttgatttgtcaatgagatgcatcaaaattaacgtcttatcaa--tt 11803132  T
Q  223 tagaaaacgagttaattt 240  Q
    || ||||| |||||||||    
T  11803131 taaaaaacaagttaattt 11803114  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 15826518 - 15826427
Alignment:
Q  125 agatattataatatagatcatgt---tatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtcta 213  Q
    ||||||||||||||| |||||||   |||| ||||||||||| |||  | || ||||||||||||||||| ||  || |||||||| |||||    
T  15826518 agatattataatataaatcatgtgtatataaaatttgacattaatcataaattatttgatatgtcaatgagataaattaaaattaatgtcta 15826427  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 43263902 - 43263802
Alignment:
Q  121 tgaaagatattataatatagatcatgt-tatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaac 219  Q
    ||||| ||||||||||||||||||||| || | ||| ||||||| |||  |||| |||||||||| |||||| ||  |||||||||||||||| ||||||    
T  43263902 tgaaacatattataatatagatcatgtctacaaaatatgacattaatcatatattatttgatatggcaatgagataaatcaaaattaacgtcttatgaac 43263803  T
Q  220 t 220  Q
    |    
T  43263802 t 43263802  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 22850933 - 22850998
Alignment:
Q  175 atttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaacttttagaaaacgagttaattt 240  Q
    |||||| ||||||| || ||||||||||||||| |||| |||||||||||  ||| ||||||||||    
T  22850933 atttgacatgtcaacgagatgcatcaaaattaatgtcttatgaacttttatcaaatgagttaattt 22850998  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 263
Target Start/End: Complemental strand, 12479444 - 12479233
Alignment:
Q  53 aaacttaatatatgacaaatatgataattctttatcgtgtaatcgtattgtaaaattgattgttgaactgaaagatattataatatagatcatg-ttata 151  Q
    |||||||||||||| || ||  |||||||||||||||  |||  ||||| |||||||||  |||  | | ||||||||||| ||||||| ||||  ||||    
T  12479444 aaacttaatatatggcatattcgataattctttatcggataaatgtattttaaaattgaaggttagattaaaagatattattatatagaacatgactata 12479345  T
Q  152 caatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaacttttagaaaacgagttaatttgatgtatctta 251  Q
     || ||| |||| ||||||||| | ||||| ||||||||  || |||||||||||| || | ||  ||||||  ||||||||| ||||| |  | | |||    
T  12479344 aaaattgtcattaatcggatatcagttgatgtgtcaatgtgatacatcaaaattaaggtatcattcacttttgaaaaacgagtaaattttaattttttta 12479245  T
Q  252 ttgacatatcaa 263  Q
    ||||||||||||    
T  12479244 ttgacatatcaa 12479233  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 5720692 - 5720608
Alignment:
Q  104 aaaattgattgttgaactgaaagatattataatatagatcatgt-tatacaatttgacatttatcggatataatttgatatgtca 187  Q
    |||||||||||||||| |||||||||| |||  ||||| ||||| |||| ||||||||||  |||  | || |||||||||||||    
T  5720692 aaaattgattgttgaattgaaagatataatagcatagaccatgtctataaaatttgacatgaatcataaatcatttgatatgtca 5720608  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 34835278 - 34835388
Alignment:
Q  115 ttgaactgaaagatattataatatagatcatgtt-atacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtcta 213  Q
    ||||| |||||| ||| || | ||||||| |||| ||| ||||||| ||| ||||||||| ||||||| || ||||||| |||||||||||||| ||||     
T  34835278 ttgaattgaaagctatcatcacatagatcttgtttataaaatttgatattaatcggatatcatttgatgtgccaatgaattgcatcaaaattaaagtctt 34835377  T
Q  214 atgaactttta 224  Q
    || ||||||||    
T  34835378 ataaactttta 34835388  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 11713177 - 11713264
Alignment:
Q  153 aatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaacttttagaaaacgagttaattt 240  Q
    ||||| ||||| |||| | || || |||||||||||| | || | ||||||||||||||| ||||||||||  ||||| |||||||||    
T  11713177 aattttacattaatcgtaaatcatatgatatgtcaattagatacctcaaaattaacgtcttatgaacttttgaaaaacaagttaattt 11713264  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 259
Target Start/End: Complemental strand, 27823286 - 27823147
Alignment:
Q  121 tgaaagatattataatatagatcat-gttatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaac 219  Q
    ||||||||||||||| |||||||||  ||||  ||||| ||||| | |||| || || |||||||||||| | || | | |||||||| |||| | ||||    
T  27823286 tgaaagatattataacatagatcatatttatgaaattttacattaaccggaaatcatatgatatgtcaattagataccttaaaattaatgtcttaagaac 27823187  T
Q  220 ttttagaaaacgagttaa-tttgatgtatcttattgacata 259  Q
    ||||| |||| ||||||| |||||||||| |||||||||||    
T  27823186 tttta-aaaatgagttaattttgatgtattttattgacata 27823147  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 35199818 - 35199741
Alignment:
Q  147 ttatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaactttta 224  Q
    ||||| ||||| ||||| ||||||||| |||||||||| |||| || || ||||||||||| |||| || ||||||||    
T  35199818 ttataaaattttacattaatcggatatcatttgatatgccaataaattgtatcaaaattaatgtcttataaactttta 35199741  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 259
Target Start/End: Original strand, 45685745 - 45685903
Alignment:
Q  104 aaaattgattgttgaactgaaagatattataatatagatcatg-ttatacaatttgacatttatcggatataatttgatatgtcaatgaaatgca-tcaa 201  Q
    ||||| |||||||  | |||||||| ||||||||||||| ||| ||||| ||||||| ||| ||  || || ||||||||| ||||||| ||||| |  |    
T  45685745 aaaatcgattgttagattgaaagatgttataatatagataatgtttataaaatttgatattaataagaaatcatttgatatttcaatgagatgcatttga 45685844  T
Q  202 aattaacgtctaatgaacttttagaaaacgagttaatt-tgatgtatcttattgacata 259  Q
    |||||| |||  ||||||||||| |||| ||||||||| ||   |||||||||||||||    
T  45685845 aattaatgtcctatgaacttttaaaaaatgagttaattatgtactatcttattgacata 45685903  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 9779436 - 9779392
Alignment:
Q  168 ggatataatttgatatgtcaatgaaatgcatcaaaattaacgtct 212  Q
    |||||| |||||||||||||||||  ||||| |||||||||||||    
T  9779436 ggatatcatttgatatgtcaatgagttgcattaaaattaacgtct 9779392  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 34396502 - 34396582
Alignment:
Q  184 gtcaatgaaatgcatcaaaattaacgtctaatgaacttttagaaaacgagttaa-tttgatgtatcttattgacatatcaa 263  Q
    ||||||||||| ||||||||||||||||  ||||| ||||  ||||| |||||| |||| | ||||||||| |||||||||    
T  34396502 gtcaatgaaatacatcaaaattaacgtcatatgaatttttgaaaaacaagttaattttggtatatcttattaacatatcaa 34396582  T

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