View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_45 (Length: 273)
Name: NF1288_low_45
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_45 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 41379024 - 41379258
Alignment:
| Q |
30 |
aattctgacctttcaacaacctttgtcttctccctgtaaggtttcacaagcacacgagagccacgaacataatgaggatttcccttgtccaaaatcattc |
129 |
Q |
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| T |
41379024 |
aattctgacctttcaacaacctttgtcttctccctgtaaggtttcacaagcacacgagagccacgaacataatgaggatttcccttgtccaaaatcattc |
41379123 |
T |
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| Q |
130 |
tcacggtttctggatcagcaaatgttacaaagccaaacattcttttctgctggcatggaatcctaacatcttcaacatatccaaatgcgctgcaaagaaa |
229 |
Q |
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| T |
41379124 |
tcacggtttctggatcagcaaatgttacaaagccaaacattcttttctgctggcatggaatcctaacatcttcaacatatccaaatgcgctgcaaagaaa |
41379223 |
T |
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| Q |
230 |
aaatatgtgaaaccaaatttactaataagtataat |
264 |
Q |
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| T |
41379224 |
aaatatgtgaaaccaaatttactaatacgtataat |
41379258 |
T |
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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 22344259 - 22344422
Alignment:
| Q |
51 |
tttgtcttctccctgtaaggtttcacaagcacacgagagccacgaacataatgaggatttcccttgtccaaaatcattctcacggtttctggatcagcaa |
150 |
Q |
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|||| ||||||| |||| ||||||||||| || ||||| || ||||||||||||||||||||||| |||||||||||| | || |||||||| ||| ||| |
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| T |
22344259 |
tttggcttctccttgtatggtttcacaagaacccgagatcctcgaacataatgaggatttcccttatccaaaatcattttaacagtttctggttcaacaa |
22344358 |
T |
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| Q |
151 |
atgttacaaagccaaacattcttttctgctggcatggaatcctaacatcttcaacatatccaaa |
214 |
Q |
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| T |
22344359 |
atgtcacaaatccaaacatccttctctgctggcatggaatccttacatcttcaacagatccaaa |
22344422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 206423 - 206481
Alignment:
| Q |
148 |
caaatgttacaaagccaaacattcttttctgctggcatggaatcctaacatcttcaaca |
206 |
Q |
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| T |
206423 |
caaatgtaacaaagccaaacatacgcttctgctggtatggaatcctcacatcttgaaca |
206481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 14610954 - 14610896
Alignment:
| Q |
148 |
caaatgttacaaagccaaacattcttttctgctggcatggaatcctaacatcttcaaca |
206 |
Q |
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| T |
14610954 |
caaatgtaacaaagccaaacatacgcttctgctggtatggaatcctcacatcttgaaca |
14610896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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