View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_47 (Length: 264)
Name: NF1288_low_47
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 42991232 - 42991005
Alignment:
| Q |
6 |
acttacataatatgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgc |
105 |
Q |
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|||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42991232 |
acttacatgatacgtcggggcttccagatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctgtttcctttgc |
42991133 |
T |
|
| Q |
106 |
cttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaa |
205 |
Q |
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|||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
42991132 |
cttgagaaaacacgtttgtgtggagaatgtaaggattaccgctaacatttcccaagaactcaaaatcaatttcgtcgtgagttggcccttgtgatgacaa |
42991033 |
T |
|
| Q |
206 |
ctgcaccataagcaaaatgctagtaaaa |
233 |
Q |
| |
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|||||||||||| |||||||| |||||| |
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| T |
42991032 |
ctgcaccataaggaaaatgctcgtaaaa |
42991005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 35017899 - 35017692
Alignment:
| Q |
6 |
acttacataatatgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgc |
105 |
Q |
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|||||||| || |||||||| ||||||||||| ||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||| ||||| | |
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| T |
35017899 |
acttacatgatgtgttggggtttccaaatgatggagtaagtgtggaagtttctagtggggtcaaaccataggtagaattgttgttctctattacctttac |
35017800 |
T |
|
| Q |
106 |
cttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaa |
205 |
Q |
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| T |
35017799 |
cttgagtgaagatgtttgtgtgaagaatataagggtcaccacttgtgtttcccaagaactcaaaatcaatctcatcatgggttggtccttgggatgacag |
35017700 |
T |
|
| Q |
206 |
ctgcacca |
213 |
Q |
| |
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||| |||| |
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| T |
35017699 |
ctgtacca |
35017692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 38214294 - 38214506
Alignment:
| Q |
3 |
attacttacataatatgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctt |
102 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||| |
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| T |
38214294 |
attacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctt |
38214393 |
T |
|
| Q |
103 |
tgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacga |
202 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| || |
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| T |
38214394 |
tgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatga |
38214493 |
T |
|
| Q |
203 |
caactgcaccata |
215 |
Q |
| |
|
||||||||||||| |
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|
| T |
38214494 |
caactgcaccata |
38214506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 38218513 - 38218725
Alignment:
| Q |
3 |
attacttacataatatgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctt |
102 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||| |
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|
| T |
38218513 |
attacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctt |
38218612 |
T |
|
| Q |
103 |
tgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacga |
202 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| || |
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| T |
38218613 |
tgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatga |
38218712 |
T |
|
| Q |
203 |
caactgcaccata |
215 |
Q |
| |
|
||||||||||||| |
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| T |
38218713 |
caactgcaccata |
38218725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 37188689 - 37188574
Alignment:
| Q |
66 |
tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaact |
165 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || ||||| ||||| |||||| || |||||||||||||| |||||||| || | ||||||||||| | |
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| T |
37188689 |
tcaaaccataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaatt |
37188590 |
T |
|
| Q |
166 |
caaaatcaatttcatc |
181 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
37188589 |
caaagtcaatttcatc |
37188574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 53495099 - 53494981
Alignment:
| Q |
63 |
ggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaaga |
162 |
Q |
| |
|
||||||||||| || | |||||||||||||||||||||||| |||||| ||||||| || ||||||||| |||| || || || || ||||| || |||| |
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| T |
53495099 |
ggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatggttctccactcacattccctaaga |
53495000 |
T |
|
| Q |
163 |
actcaaaatcaatttcatc |
181 |
Q |
| |
|
| ||||| ||||| ||||| |
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|
| T |
53494999 |
attcaaagtcaatctcatc |
53494981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 53499054 - 53498939
Alignment:
| Q |
66 |
tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaact |
165 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || ||||||||||| |||||| || |||||||| |||||||| ||||| || | |||||||||||| | |
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|
| T |
53499054 |
tcaaaccaaaggtaaaattgttgctctctgttacctttgccttggctaaacacattggtgtgaaggatgtaaggatcaccactcaaatttcccaagaatt |
53498955 |
T |
|
| Q |
166 |
caaaatcaatttcatc |
181 |
Q |
| |
|
|||| ||||| ||||| |
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|
| T |
53498954 |
caaagtcaatctcatc |
53498939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 53492749 - 53492634
Alignment:
| Q |
66 |
tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaact |
165 |
Q |
| |
|
|||||||| ||||| | |||||| ||||| | ||||||||||| |||||| || || ||||| |||||||| ||||| || | |||||||||||| | |
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|
| T |
53492749 |
tcaaaccaaaggtaaatttgttgctctctgtcacctttgccttggctaaacacattggtatgaaggatgtaaggatcaccactcaaatttcccaagaatt |
53492650 |
T |
|
| Q |
166 |
caaaatcaatttcatc |
181 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
53492649 |
caaagtcaatttcatc |
53492634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 53502192 - 53502101
Alignment:
| Q |
66 |
tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcc |
157 |
Q |
| |
|
|||||||| || |||||||||||||| || ||||||||||||||| || || ||||||||||| ||||| || ||||| || |||||||| |
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|
| T |
53502192 |
tcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttcc |
53502101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 52590852 - 52590708
Alignment:
| Q |
42 |
taagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggt |
141 |
Q |
| |
|
|||||||| |||| ||||||||| || ||||| | ||||||||||||||| |||||||||| ||||| | | | | ||| || |||| ||| ||||| | |
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|
| T |
52590852 |
taagtgtgaaagtccttggtggggtcgaaccacaaatagaattgttgttctttatttcctttcccttgtgcataaatgtttgtatgaacaatataaggat |
52590753 |
T |
|
| Q |
142 |
caccgctaacatttcccaagaactcaaaatcaatttcatcgtgag |
186 |
Q |
| |
|
|||| || | || ||||| || |||||||| |||||||| |||| |
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|
| T |
52590752 |
caccacttaagttacccaaaaattcaaaatctatttcatcatgag |
52590708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 16942266 - 16942166
Alignment:
| Q |
45 |
gtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcac |
144 |
Q |
| |
|
|||||||||| |||||| || |||||||| | ||||||||||| |||||||| ||||| ||||| | || ||||| || |||||||| ||||| |||| |
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|
| T |
16942266 |
gtgtggaagtccttggtagggtcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcac |
16942167 |
T |
|
| Q |
145 |
c |
145 |
Q |
| |
|
| |
|
|
| T |
16942166 |
c |
16942166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 17012931 - 17012831
Alignment:
| Q |
45 |
gtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcac |
144 |
Q |
| |
|
|||||||||| |||||| || |||||||| | ||||||||||| |||||||| ||||| ||||| | || ||||| || |||||||| ||||| |||| |
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| T |
17012931 |
gtgtggaagtccttggtagggtcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcac |
17012832 |
T |
|
| Q |
145 |
c |
145 |
Q |
| |
|
| |
|
|
| T |
17012831 |
c |
17012831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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