View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_52 (Length: 251)
Name: NF1288_low_52
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 49953626 - 49953783
Alignment:
| Q |
13 |
aatatcctatttaagcaacttcgatgagaccactactttcccttaatcaacattcccaatttcccatatatcatcaaacatatat----ttactcactgc |
108 |
Q |
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| T |
49953626 |
aatatccaatttaagcaacttcgatgagaccactactttcccttaatcaacattcccaatttcccatatatcatcaaacatatatttaattactcactgc |
49953725 |
T |
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| Q |
109 |
cctttttatttatttttccagtatgacactacatttgaagtttaaagaagctagcaag |
166 |
Q |
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| T |
49953726 |
cctttttatttatttttccagtatgacactacatttgaagtttaaagaagctagcaag |
49953783 |
T |
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