View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_53 (Length: 251)
Name: NF1288_low_53
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 269355 - 269116
Alignment:
| Q |
1 |
tgttgcgaggcgattcaaaatcaattgccaagagaagactagtacttttgattggacacaaatttctcacaccttggatggtaattaactcgccgtttta |
100 |
Q |
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| T |
269355 |
tgttgggaggcgattcaaaatcaattgccaagagaagattagtacttttgattgggcacaaatttctcacaccttggatggtaattaactcgccgtttca |
269256 |
T |
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| Q |
101 |
acacagaggttggatctaactgaaggagttgggctatcataacatagcgaactaatatctgaattctgactataaaaggtgtccacatttagtatacaac |
200 |
Q |
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| T |
269255 |
acacagaggttggatctaactaaaggagttgggctatcataacatagcgaactaatatctgaattctgactataaaaggtgtccacatttagtatccaac |
269156 |
T |
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| Q |
201 |
acgactaagatagaattactttcggcaatagggttcctat |
240 |
Q |
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| T |
269155 |
atgactaaaatagaattactttcggcgatagggttcctat |
269116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 26645565 - 26645730
Alignment:
| Q |
28 |
ccaagagaagactagtacttttgattggacacaaatttctcacaccttggatggtaattaactcgccgttttaacacagaggttggatctaactgaagga |
127 |
Q |
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| T |
26645565 |
ccaagagaagacccgtacttttgatggggcacaaatttctcacacattggatagtaactaactcaccctttta--actgaggttggatctagaggaagga |
26645662 |
T |
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| Q |
128 |
gttgggctatcataacatagcgaactaatatctgaattctgactataaaaggtgtccacatttagtat |
195 |
Q |
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| T |
26645663 |
gtttggttatcacaacaaagtgaaacaatatttgaattctgactataacaggtgtccatatttagtat |
26645730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 26751531 - 26751696
Alignment:
| Q |
28 |
ccaagagaagactagtacttttgattggacacaaatttctcacaccttggatggtaattaactcgccgttttaacacagaggttggatctaactgaagga |
127 |
Q |
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|||||||||||| ||||||||||| || |||||||||||||||| |||||| |||| |||||| || ||||| || ||||||||||||| |||||| |
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| T |
26751531 |
ccaagagaagacccgtacttttgatggggcacaaatttctcacacattggatagtaactaactcaccctttta--actgaggttggatctagaggaagga |
26751628 |
T |
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| Q |
128 |
gttgggctatcataacatagcgaactaatatctgaattctgactataaaaggtgtccacatttagtat |
195 |
Q |
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| T |
26751629 |
gtttggttatcacaacaaagtgaaacaatatttgaattctgactataacaggtgtccatatttagtat |
26751696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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