View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1288_low_54 (Length: 251)

Name: NF1288_low_54
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1288_low_54
NF1288_low_54
[»] chr8 (2 HSPs)
chr8 (13-108)||(13774297-13774392)
chr8 (187-251)||(13774422-13774486)
[»] chr1 (1 HSPs)
chr1 (54-134)||(39457437-39457517)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 13774297 - 13774392
Alignment:
Q  13 aatattctagatatagataacagaattatatacatttctcactttcactttaatccttgtgatacatcatatattttattagtacaaaacatttat 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| ||| ||||||||||||||||||    
T  13774297 aatattctagatatacataacagaattatatacatttctcactttcactttaattcttatgacacatcatatactttgttagtacaaaacatttat 13774392  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 13774422 - 13774486
Alignment:
Q  187 taacatcgaagcataaattcaaaatctaacctaaaagtcacaatttaattagaatacatctatca 251  Q
    ||||||| ||| ||||||| |||||||||||||||| |||||||||  |||||||||||||||||    
T  13774422 taacatcaaagtataaattaaaaatctaacctaaaaatcacaatttccttagaatacatctatca 13774486  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 39457437 - 39457517
Alignment:
Q  54 ctttcactttaatccttgtgatacatcatatattttattagtacaaaacatttatcacctcattaattaacataagttttt 134  Q
    ||||||||||| ||||||||| |||||||  || || | || ||||||||||||||||||||||| ||||||  |||||||    
T  39457437 ctttcactttagtccttgtgacacatcatgcatcttgtcagcacaaaacatttatcacctcattagttaacaggagttttt 39457517  T

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