View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_6 (Length: 638)
Name: NF1288_low_6
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 170 - 631
Target Start/End: Original strand, 33535142 - 33535603
Alignment:
| Q |
170 |
catcaataataaaagnnnnnnnggtttacgtgtaatttggaagagaatactttttgaccaaaaataaagcattgaaaagcaaatatatgatttctcctag |
269 |
Q |
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| T |
33535142 |
catcaataataaaagaaaaaaaggtttacgtgtaatttagaagagaatactttttgaccaaaaataaagcattgaaaagcaaatatatgatttctcctag |
33535241 |
T |
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| Q |
270 |
ctaatcactgcaaacaattatcaaatagagaaatgagttttgtgcgggaaacaaaatgaattgacatataatataataacacgtcggccaaaattaacca |
369 |
Q |
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| T |
33535242 |
ctaatcactgcaaacaattatcaaatagagaaatgagttttgtgtgggaaacaaaatgaattgacatataatataataacacgtcggccaaaattaacca |
33535341 |
T |
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| Q |
370 |
cattccattatgaaatcaaatatgattaataattgttataatttgtatctttcctagccttgaaattaataacaaatttgttatgatagctggtaacaac |
469 |
Q |
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| T |
33535342 |
cattccattatgaaatcaaatatgattaataattgttataatatgtatctttcctagccttgaaattaataacaaatttgttatgatagctggtaacaac |
33535441 |
T |
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| Q |
470 |
ttctcctgttgaaaaaagttcaagatttggtgattgatatatatgatgatgactattttgatttgttcccaagacacaaccactaagacctttatccaaa |
569 |
Q |
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| T |
33535442 |
ttctcctgttgaaaaaagttcaagatttggtgattgatatatatgatgatgactattttgatttgttcccaagacacaaccactaagacctttatccaaa |
33535541 |
T |
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| Q |
570 |
ttcaccttttacatctttgcttaatcaatattcaatatagtatatagtaatagcctttgttt |
631 |
Q |
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| T |
33535542 |
ttcaccttttacatctttgcttaatcaatattcaatatagtatatagtaatagcctttgttt |
33535603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 33535006 - 33535077
Alignment:
| Q |
30 |
gaaacttgaagttaaagaatgaaaggagcttaggtatgaactattacatcattctatgcattcgataatgaag |
102 |
Q |
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| T |
33535006 |
gaaacttgaagttaaagaatgaa-ggagcttaggtatgaactattacatcattctatgcattcgataatgaag |
33535077 |
T |
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