View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_66 (Length: 204)
Name: NF1288_low_66
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 779566 - 779449
Alignment:
| Q |
51 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcgtttaannnnnnnctccgcagcagcctttgctttctcctgggcagcaatcttag |
150 |
Q |
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| T |
779566 |
cactttccccatccttcttctccgtcccaaccccggacttctcatcgttcacttttatcc-ccgcagcagcctttgctttctcctgggaagcaatcttag |
779468 |
T |
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| Q |
151 |
ccttctcggcagcaacagc |
169 |
Q |
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| T |
779467 |
ccttctcagcagcaacagc |
779449 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 772045 - 772099
Alignment:
| Q |
114 |
gcagcagcctttgctttctcctgggcagcaatcttagccttctcggcagcaacag |
168 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
772045 |
gcagcagcctttgctttctccttagcagcaatcttagccttctccgcagcaacag |
772099 |
T |
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