View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288_low_9 (Length: 570)
Name: NF1288_low_9
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 203 - 483
Target Start/End: Complemental strand, 32483534 - 32483254
Alignment:
| Q |
203 |
gctgatagatatgaaatatggtggagattttaagcttgaacataaacacacgcaatcgatacggttggattgttagcagatatagttccaaaactatgtc |
302 |
Q |
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| T |
32483534 |
gctgatagatatgaaatatggtggagattttaagcttgaacataaacacacgcaatcgatacggttggattgttagcagatatagttccaaaactatgtc |
32483435 |
T |
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| Q |
303 |
atcagtatttggctatctttttcagagaattcctctaaaccaaaagattctctctttgtttttgctttcctttatttcaccactcactctcttaaccata |
402 |
Q |
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| T |
32483434 |
atcagtatttggctatctttttcagagaattcctctaaaccaaaagattctctctttgtatttgctttcctttatttcaccactcactctcttaaccata |
32483335 |
T |
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| Q |
403 |
acactgaaaagggtcaatcacggaaactgctagtgcttctgattaatacaccttacaccttatgtcacagtacaagcccag |
483 |
Q |
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| T |
32483334 |
acactgaaaagggtcaatcacggaaactgctagtgcttctgattaatacaccttacaccttatgtcacagtacaagtccag |
32483254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 32483735 - 32483602
Alignment:
| Q |
10 |
aagaatatgatggtagctagtgattgaggtgagaatatgtgtggatgtgaaagagagagggaatgtgctaagaaagaggaggaaaaacagtttctttctt |
109 |
Q |
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| T |
32483735 |
aagaaaatgatggtagctagtgattgaggtgagaatatgtgtggatgtgaaagagagagggaatgtgctaagaaagaggaggaaaaacagtttctttctt |
32483636 |
T |
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| Q |
110 |
ggtcagggctactaaataacagtgatgtttttca |
143 |
Q |
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| T |
32483635 |
ggtcagggctactaaataacagtgatgtttttca |
32483602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 479 - 566
Target Start/End: Original strand, 779480 - 779566
Alignment:
| Q |
479 |
cccaggagaaagcaaaggctgctgcggagnnnnnnnttaaacgatgagaagtccggggttgggacggagaagaaggatggggaaagtg |
566 |
Q |
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| T |
779480 |
cccaggagaaagcaaaggctgctgcggggataaaagtgaa-cgatgagaagtccggggttgggacggagaagaaggatggggaaagtg |
779566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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