View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289-Insertion-1 (Length: 345)
Name: NF1289-Insertion-1
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 39731882 - 39732218
Alignment:
| Q |
8 |
ctttagaggtatgatgagttaatgtaccatcaatctccttcattcattaatcacatttannnnnnnnattgaactttccattattttatggaggaaaaaa |
107 |
Q |
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| T |
39731882 |
ctttagaggtatgatgaattaatgtaccatcaatctccttcattcattaatcacatttatttattttattgaactttccattattttatggaggaaaaaa |
39731981 |
T |
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| Q |
108 |
caaaagagaaaagaatgtgcatgctctcgtgcccctaagatctaccactcaatgagagggtgataaagaaatggactnnnnnnnnttaaagttatagatt |
207 |
Q |
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| T |
39731982 |
caaaagagaaaagaatgtgcatgctctcgtgcccctaagatctaccactcaatgagagggtgataaagaaatggactaaaaaaa-ttaaagttatagatt |
39732080 |
T |
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| Q |
208 |
cttgttttttgttgatagctcatttacatggcttttacgattttggagtgggtccaacatttgtttagttttgttgcatttgattttgtcaactgcctct |
307 |
Q |
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| T |
39732081 |
cttgttttttgttgatagctcatttacatggcttttacgattttggagtgggtccaacatttgtttagttttgttgcatttgattttgtcaactgcctct |
39732180 |
T |
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| Q |
308 |
caattacgtttaccactttgtaaaagtaacagattcta |
345 |
Q |
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| T |
39732181 |
caattacgtttaccactttgtaaaagtaacagattcta |
39732218 |
T |
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