View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1289-Insertion-2 (Length: 657)
Name: NF1289-Insertion-2
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1289-Insertion-2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 449 - 657
Target Start/End: Complemental strand, 2568067 - 2567859
Alignment:
| Q |
449 |
gtctgatttaaccgacttatataaagacgatgtatttcaaaatatttctaatggcttttgttggaaaatccttacccacaaagttgaacatggacaacaa |
548 |
Q |
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| T |
2568067 |
gtctgatttaaccgacttatataaagacgatgtatttcaaaatatttctaatggcttttgttggaaaatccttacccacaaaattgaacatggacaacaa |
2567968 |
T |
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| Q |
549 |
ggtggcatggggtccaagtccaagaaccctggcctctatttctttcttttctggtcctatgaatatgatagctccacacaagataattacaatataaata |
648 |
Q |
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| T |
2567967 |
ggtggcatggggtccaagtccaagaaccctggcctctatttctttcttttctggtcctatgaatatgatagctccacacaagataattacaatataaata |
2567868 |
T |
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| Q |
649 |
aatgcaata |
657 |
Q |
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| T |
2567867 |
aatgcaata |
2567859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 233 - 372
Target Start/End: Complemental strand, 2568225 - 2568086
Alignment:
| Q |
233 |
gattttcatacccttacaaacaagtttacaagttttgcaagaatacattacaacaatataaaaattagataatattattgtgaatatgatcggatattta |
332 |
Q |
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| T |
2568225 |
gattttcatacccttacaaacaagtttacaagttttgcaagaatacattacaacaatataaaaattagataatattattgtgaatatgatcggatattta |
2568126 |
T |
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| Q |
333 |
taattgttgcatcaaaataatgtttaagcgtgtcaatagg |
372 |
Q |
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| T |
2568125 |
taattgttgcatcaaaataatgtttaagcgtgtcaatagg |
2568086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 2568447 - 2568295
Alignment:
| Q |
20 |
tgaaaaacggtgtcacattatcttgttattaaatctataactaaaatgacataacatttgtgtttggcgctaat-------caatatctttgcacaaatc |
112 |
Q |
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| T |
2568447 |
tgaaaaacagtgtcacattatcttgttattaaatctataactaaaatgacataacatttatatttggcgctgatttacactcaatatctttgcacaaatc |
2568348 |
T |
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| Q |
113 |
gttagattctacattacatcatccttgacaattggatgagctgcagtgcattg |
165 |
Q |
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| T |
2568347 |
gttagattctacattacatcatccttgacaattggatgagctgcagtgcattg |
2568295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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