View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1289-Insertion-3 (Length: 800)

Name: NF1289-Insertion-3
Description: NF1289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1289-Insertion-3
NF1289-Insertion-3
[»] chr8 (3 HSPs)
chr8 (7-800)||(27066234-27067027)
chr8 (722-783)||(27080633-27080694)
chr8 (709-780)||(27053747-27053818)


Alignment Details
Target: chr8 (Bit Score: 762; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 7 - 800
Target Start/End: Original strand, 27066234 - 27067027
Alignment:
Q  7 attctcaccatacgaagtgaaagaatcatcaccagaaccagctccatctctgtaattggtggatttctcttgagcagcaaaacttcctttaccatagttc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27066234 attctcaccatacgaagtgaaagaatcatcaccagaaccagctccatctctgtaattggtgaatttctcttgagcagcaaaacttcctttaccatagttc 27066333  T
Q  107 ttgaaagtattctcaggtttgttcaaattcttgctatagcttacgaaagcatctacagcgcttgagcctttttctgaatatccagagaaatcagatttga 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27066334 ttgaaagtattctcaggtttgttcaaattcttactatagcttacgaaagcatctacagcgcttgagcctttttctgaatatccagagaaatcagatttga 27066433  T
Q  207 agacgttagcatttttcgcatactgcgtgaaaccgttaactgcgtgaatagagtctctgtcgtaacttgcgaaactttggttaccggagttaccaccatc 306  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  27066434 agacgttagcatttttcgcatactgagtgaaaccgttaactgcgtgaatagagtctttgccgtaacttgcgaaactttggttaccggagttaccaccatc 27066533  T
Q  307 gctgtagcttacgaatgattgttctcttccggtcacggaggctgtgtaggtggtgaattttacgttaggaatgttgctttcttcagagtaggctttgaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27066534 gctgtagcttacgaatgattgttctcttccggtcacggaggctgtgtaggtggtgaattttaggttaggaatgttgctttcttcagagtaggctttgaat 27066633  T
Q  407 tcaccgaatccagccatggatttagtgccgtagctgttgaaggtttgcacaccctcattgttgtttaaggcgtagtttttgaaactgtcattgtggccgg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27066634 tcaccgaatccagccatggatttagtgccgtagctgttgaaggtttgcacaccctcattgttgtttaaggcgtagtttttgaaactgtcattgtggccgg 27066733  T
Q  507 tggagattttgctgtatcttgcgaattcgttgtgtttttcgttgtataaaccgttggagtaattcttgaacgcgtcgattccattgagtttgtgagttcc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27066734 tggagattttgctgtatcttgcgaattcgttgtgtttttcgttgtataaaccgttggagtaattcttgaacgcgtcgattccattgagtttgtgagttcc 27066833  T
Q  607 ataggtggtgaaattctctccgaggctgtggaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgagt 706  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27066834 ataggtggtgaaattctctccgaggctgtagaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgagt 27066933  T
Q  707 tccgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggctt 800  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27066934 tccgggaagcagaagagatgggcggcggagcagaattccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggctt 27067027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 722 - 783
Target Start/End: Original strand, 27080633 - 27080694
Alignment:
Q  722 agatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttt 783  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  27080633 agatgggcagccgagcagaactccggcaactttgtggagagtgtgttggctgccgcgtgttt 27080694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 709 - 780
Target Start/End: Original strand, 27053747 - 27053818
Alignment:
Q  709 cgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtg 780  Q
    |||||||||||||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||| |||||    
T  27053747 cgggaagcagaagagatgtgcggcagagcagaattccggcaactttgtggataatgtgttggcggcagcgtg 27053818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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