View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12890_high_6 (Length: 271)
Name: NF12890_high_6
Description: NF12890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12890_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 29135127 - 29134871
Alignment:
| Q |
1 |
atgaaatgatagaaaagttggttttgaaattgataagagtgagtgagtgag----acacaaatgtttgccacacacccattttttcatattattcatgtg |
96 |
Q |
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| T |
29135127 |
atgaaatgatagaaaagttggttttgaaattgataagagtgagtgagtgagtgagacacaaatgtttgccacacacccattttttcatattactcatgtg |
29135028 |
T |
|
| Q |
97 |
caaaaatatgattaatttagttgagtatatggtattcacattgaaaattatggttaattaatgtggttgaattagccacagcttgagtcatgaattgaat |
196 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29135027 |
caaaaataagattaatttagttgagtatatggtattcacattgaaaattatggttaattaatgtggttgaattagccacagcttgagtcatgaattgaat |
29134928 |
T |
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| Q |
197 |
taataatctattcaaataaattgattacattttttaacttgattaaacagatattgt |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29134927 |
taataatctattcaaataaattgattacattttttaacttgattaaacagatattgt |
29134871 |
T |
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