View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12890_low_11 (Length: 219)
Name: NF12890_low_11
Description: NF12890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12890_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 56020400 - 56020597
Alignment:
| Q |
18 |
aaaaatggatttagttttaaagaaactattcaaactaaatatttacccatgcaactaagtattgctcccctgcttccctactagtatccagggctctacg |
117 |
Q |
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| T |
56020400 |
aaaaatggatttagttttaaagaaactattcaaactaaatatttacccatgcaactaagtattgctcccctgcttccctactagtatccagggctctacg |
56020499 |
T |
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| Q |
118 |
tccggtgatcagttccagcaaaaccacaccaaaactgtagatatcggattgtttagttaatttgccagtcatagcatattctagtgcacaatagcctt |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
56020500 |
tccggttatcagttccagcaaaaccacaccaaaactgtagatatcggattgtttagttaatttgccagtcatagcatattctagtgcgcaatagcctt |
56020597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 215
Target Start/End: Original strand, 6156129 - 6156296
Alignment:
| Q |
48 |
caaactaaatatttacccatgcaactaagtattgctcccctgcttccctactagtatccagggctctacgtccggtgatcagttccagcaaaaccacacc |
147 |
Q |
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| T |
6156129 |
caaactaaatttttacccatgacattaagtgtcgctctcctgctcttctacgattatctagtgctctacgtccagtgatcaactctagcaaaaccatacc |
6156228 |
T |
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| Q |
148 |
aaaactgtagatatcggattgtttagttaatttgccagtcatagcatattctagtgcacaatagcctt |
215 |
Q |
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| T |
6156229 |
aaaactatagatatcagattgtcgggttaatttgccagtcttcgcatattctggtgcacagtagcctt |
6156296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 54031781 - 54031956
Alignment:
| Q |
24 |
ggatttagttttaaagaaactattcaaactaaatatttacccatgcaactaagtattgctcccctgcttccctactagtatccagggctctacgtccggt |
123 |
Q |
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||||||| ||||||| ||| ||| | ||||||||||||||||||| |||||||| |||||| |||| || |||||| ||| | || || ||||| || |
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| T |
54031781 |
ggatttatttttaaataaattatacgaactaaatatttacccatgaaactaagttttgctctcctggttttttactagcatctattgcccttcgtccagt |
54031880 |
T |
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| Q |
124 |
gatcagttccagcaaaaccacaccaaaactgtagatatcggattgtttagttaatttgccagtcatagcatattct |
199 |
Q |
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|||| |||| ||||||||||||||| ||||||||||| || | ||||||||||||| |||| ||||||||| |
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| T |
54031881 |
aatcaactccaacaaaaccacaccaaagctgtagatatcagacttaagagttaatttgccactcatcgcatattct |
54031956 |
T |
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