View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12890_low_2 (Length: 512)
Name: NF12890_low_2
Description: NF12890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12890_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Complemental strand, 38532832 - 38532404
Alignment:
| Q |
11 |
aagcaaaggcaaaagggaagaaatcaagattcattttgttgtacatgtggtcatggatctcttttttatatgcatgctatgaaaattaattatttttaat |
110 |
Q |
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| T |
38532832 |
aagcaaaagcaaaagggaagaaatcaagattcattttgttgtacatgtggtcatggatctcttttttatatgcatgctatgaaaattaattatttttaat |
38532733 |
T |
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| Q |
111 |
ttaattgaaagacaaaatttaaatgtgcttcagattctcaaatatattagactatgtagttgtgtacaaatgatattttgggataggaaacaaataaaaa |
210 |
Q |
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| T |
38532732 |
ttaattgaaagacaaaatttaaatgtgcttcagattctcaaatatattagactatgtagttgtgtacaaatgatattttgggatagtaaacaaataaaaa |
38532633 |
T |
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| Q |
211 |
cttgttgaaaagcttctgttggaacat---aacagcttctgtatggacaacttggttgtttgaaacggtaatcatggccaaggagaagacatgttcttac |
307 |
Q |
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| T |
38532632 |
cttgttgaaaagcttctgttggaacataacaacagcttctgtatggacaacttggttggttgaaacggtaatcatggccaaggagaagacatgttcttac |
38532533 |
T |
|
| Q |
308 |
ttgatcaaagtccgttgtagaaatactcgttgtgatattggtctgggatcttgcagtatgtttctttcaaggttctcatgttcgattatcttcgatatta |
407 |
Q |
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| T |
38532532 |
ttgatcaaagtccgttgtagaaatactcgttgtgatattgatctgagatcttgaagtatgtttcttttaagattctcatgttcgattatctttgatgtca |
38532433 |
T |
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| Q |
408 |
attttagtaagctataaattaccttactt |
436 |
Q |
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|||||| ||| |||||||||||||||||| |
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| T |
38532432 |
attttaataaactataaattaccttactt |
38532404 |
T |
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