View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12890_low_5 (Length: 372)
Name: NF12890_low_5
Description: NF12890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12890_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 37673055 - 37673407
Alignment:
| Q |
17 |
tgcaagctgcccttctttggttttgaatttgttaatgaattattcttacttgacaaggaattttgtgagataagtaagttgaatttgcggtaattttgag |
116 |
Q |
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| T |
37673055 |
tgcaagctgcccttctttggttttgaatttgttaatgaattattattacttgacaaggaattttgtgagataagtaagttgaatttgcggtaattttgag |
37673154 |
T |
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| Q |
117 |
cctattcggtaaacaagatttagtccaataaaatttccaataggttcacacttcacagtacataaacaaaatttccattgaggttaaataaaactaggta |
216 |
Q |
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| T |
37673155 |
cctattcggtaaacaagatttagtccaataaaatttccaataggttcacacttcacagtacataaacaaaatttccattgaggttaaataaaactaggta |
37673254 |
T |
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| Q |
217 |
aattccaattgaagatgtatggagaattagaaccttacaataatagcacaacaaatgtatatctctctttgaatttgattggagagaattacaacact-- |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37673255 |
aaatccaattgaagatgtatggagaattagaaccttacaataatagcacaacaaatgtatatctctctttgaatttgattggagagaattacaacactaa |
37673354 |
T |
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| Q |
315 |
-----------acataaattaattaggaatcaacatactccaaatgactggtg |
356 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37673355 |
aataattatcaacataaattaattaggaatcaacatattccaaatgactggtg |
37673407 |
T |
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