View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12890_low_6 (Length: 282)
Name: NF12890_low_6
Description: NF12890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12890_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 35742489 - 35742753
Alignment:
| Q |
1 |
aataagtgaagttcaagcaatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtcaattccttacaaggga |
100 |
Q |
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| T |
35742489 |
aataagtgaagttcaagcaatctttcaaacccagagaaatcaggtggaattgacaagtcaaatcctaaaaacttagagtacgtcaattccttacaaggga |
35742588 |
T |
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| Q |
101 |
ggaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatc |
200 |
Q |
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| T |
35742589 |
g---gtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgacaaaatcggaatccacttatc |
35742685 |
T |
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| Q |
201 |
gaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
268 |
Q |
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| T |
35742686 |
gaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
35742753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 35748858 - 35749116
Alignment:
| Q |
2 |
ataagtgaagttcaagcaatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtcaattccttacaagggag |
101 |
Q |
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| T |
35748858 |
ataagtgaagattaagcaatcttttaaagcctcagaaatcatgtggaattgacaagttaaatccggaaaatttgaagtaagtcaactccttacaagcgag |
35748957 |
T |
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| Q |
102 |
gaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcg |
201 |
Q |
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| T |
35748958 |
ga------cagtatatggcatttgatcgacatgtgttccgtagttcaaaagctcgagatgtttaatatccctcctagacaagaacggaatccacgtactg |
35749051 |
T |
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| Q |
202 |
aggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcgg |
266 |
Q |
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||| ||||||| |||||| || |||||||||| || |||||||||| |||||||| |||||| |
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| T |
35749052 |
aggaattcaattatgatcttgaaattgtagtcataaggtatgaaaagatgaaacttatgtatcgg |
35749116 |
T |
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