View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12890_low_8 (Length: 253)
Name: NF12890_low_8
Description: NF12890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12890_low_8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 37672822 - 37673065
Alignment:
| Q |
11 |
caaaggtgattgaagaaagtgaaagacaattgggtaataaagaca--aagtgacaaaatactatgtactaaaattaatttttgggtttacctgttcaaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37672822 |
caaaggtgattgaagaaagtgaaagacaattgggtaataaaaacacaaagtgacaaaatactatgtactaaaattaatttttgggtttacctgttcaaaa |
37672921 |
T |
|
| Q |
109 |
agatgtataatagtagtagatttctagtttcattttgtgttttacagtttaataatatctttaaagtatgtgtttctattaatgaaaattgacttaatga |
208 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37672922 |
a-atgtataatagtagtacatttctagtttcattttgtgttttacagtttaataatatctttaaagtatgtgtttctattaatgaaaattgacttaatga |
37673020 |
T |
|
| Q |
209 |
aaacatggtgcattctgatttttctattactcattgcaagctgcc |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37673021 |
aaacatggtgcattctgatttttctattactcattgcaagctgcc |
37673065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University