View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_high_1 (Length: 978)

Name: NF12891_high_1
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_high_1
NF12891_high_1
[»] chr1 (11 HSPs)
chr1 (579-852)||(8936369-8936642)
chr1 (579-852)||(8959890-8960163)
chr1 (583-831)||(9475203-9475451)
chr1 (579-852)||(8924728-8925001)
chr1 (579-849)||(9306728-9306998)
chr1 (579-852)||(9335504-9335777)
chr1 (579-812)||(9244985-9245218)
chr1 (871-962)||(9239083-9239174)
chr1 (584-852)||(9359247-9359515)
chr1 (586-806)||(8945870-8946090)
chr1 (20-158)||(17457151-17457289)
[»] chr3 (1 HSPs)
chr3 (597-812)||(9168414-9168629)
[»] chr6 (5 HSPs)
chr6 (583-805)||(15912720-15912942)
chr6 (11-208)||(13336317-13336515)
chr6 (33-181)||(25028970-25029118)
chr6 (24-161)||(13320286-13320423)
chr6 (22-156)||(13320000-13320134)
[»] chr8 (1 HSPs)
chr8 (22-173)||(10553370-10553521)
[»] scaffold0427 (1 HSPs)
scaffold0427 (22-181)||(14939-15101)
[»] chr2 (1 HSPs)
chr2 (22-144)||(16224768-16224890)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 5e-74; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 579 - 852
Target Start/End: Original strand, 8936369 - 8936642
Alignment:
Q  579 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 678  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  8936369 atagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttaccc 8936468  T
Q  679 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 778  Q
    || ||||  |||||| |||||| ||||||||| ||||||||||||||||| ||||||||| | |||| |||||| | ||||||||||||  ||||| |||    
T  8936469 gacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaatggatgtgtta 8936568  T
Q  779 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 852  Q
    ||||||||||||| || |||||||||||| ||||   ||||||| || || ||||  |||||||||||||||||    
T  8936569 tgtttgtgattttgccgcatgaagaaggtggacagaatgtttggttactagtatttgtaattgcatcacatgtt 8936642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 579 - 852
Target Start/End: Original strand, 8959890 - 8960163
Alignment:
Q  579 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 678  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  8959890 atagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttaccc 8959989  T
Q  679 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 778  Q
    || ||||| ||||| ||||||| ||||||||| ||||||||||| ||||||||||||||| | |||| ||| || | ||||||||||||  |||||  ||    
T  8959990 gacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccacatgatgttgggtcatccttaagtcgaaaaggatgtgata 8960089  T
Q  779 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 852  Q
    |||||   ||||| ||||||||||||||| |||||| ||||||| || || ||||  |||||||||||||||||    
T  8960090 tgtttccaattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt 8960163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 583 - 831
Target Start/End: Complemental strand, 9475451 - 9475203
Alignment:
Q  583 cgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaa 682  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||  |  |||||||||| || |||||||||||||||||||| ||| ||||||||||    
T  9475451 cgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaa 9475352  T
Q  683 acaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtt 782  Q
     ||| ||||||||||||| ||||||| | ||||||||||| ||||||||||||||| | | || |||||| ||||| ||||||||| |||||||||||||    
T  9475351 gcaaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtt 9475252  T
Q  783 tgtgattttaccacatgaagaaggtagacaatttgtttggctattatta 831  Q
    ||||| ||| ||||||||||||||| |||||||||||||| ||||||||    
T  9475251 tgtgagtttgccacatgaagaaggtggacaatttgtttggttattatta 9475203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 579 - 852
Target Start/End: Original strand, 8924728 - 8925001
Alignment:
Q  579 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 678  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||  |  |||||||||| ||||||||||||||| |||||||||||||||| |    
T  8924728 atagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttactc 8924827  T
Q  679 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 778  Q
    || || |  ||||| ||||| | ||||||||| ||||||||||| ||||||||||||||| | | || |||||| ||||||||||||||| ||| |||||    
T  8924828 gacaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggttgttggatcattcttaagtcgaaacggatatttta 8924927  T
Q  779 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 852  Q
    ||||  ||||||| ||||||||||||||| |||||| ||||||| || || ||||  |||||||||||||||||    
T  8924928 tgttgttgattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt 8925001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 579 - 849
Target Start/End: Complemental strand, 9306998 - 9306728
Alignment:
Q  579 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 678  Q
    ||||||||| ||||||||||||||||| |||||||||||  |||||||||| |  |||| |||||   ||||||||||||| |||||||||||||||||     
T  9306998 atagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagtatttacct 9306899  T
Q  679 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 778  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||  |   ||||||||| |||| |||||||||  |||||||||    
T  9306898 gaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcaccgcagtttgctggatcattctgaagtcgaaaaggatgtttta 9306799  T
Q  779 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacat 849  Q
    ||||| ||||| | |||||||| || | | |||||| ||||||| ||||| || |  ||||||||| ||||    
T  9306798 tgtttctgattgtgccacatgatgaggatggacaatatgtttggttattagtaatagtaattgcataacat 9306728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 579 - 852
Target Start/End: Original strand, 9335504 - 9335777
Alignment:
Q  579 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 678  Q
    ||||||||||||||||||| ||||||| |||| |||||| |||||||||| || |||||||||||   |||||||||||  || |||||||||||||||     
T  9335504 atagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacct 9335603  T
Q  679 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 778  Q
    |||||||  ||||||| ||||| ||||||||| ||||||||||| ||| | ||||||||| | | |||||| || ||||||||||||||| ||||||| |    
T  9335604 gaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggttgctgggtcattcttaagtcgaaacggatgtttga 9335703  T
Q  779 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 852  Q
    ||||  ||||||| || |||||||||||| |||||| ||||| | ||||  ||||  |||||||||||||||||    
T  9335704 tgttgctgattttgccgcatgaagaaggtggacaatatgttttgttatttgtattagtaattgcatcacatgtt 9335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 579 - 812
Target Start/End: Complemental strand, 9245218 - 9244985
Alignment:
Q  579 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 678  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||||||| | ||||||||||||  ||||||||||||| |||||||||||| ||||||    
T  9245218 atagcgaggaagggaggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgtagttgattgccttcacatagtacttaccc 9245119  T
Q  679 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 778  Q
    |||||||  ||||||  ||||| ||||||||| ||||||||||||||| ||||||||||| |   || ||| || ||| ||||||||||| ||||||| |    
T  9245118 gaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccacagcttgttgggtcattcataagtcgaaacggatgtttga 9245019  T
Q  779 tgtttgtgattttaccacatgaagaaggtagaca 812  Q
    ||||  ||||||| ||||||||||||||| ||||    
T  9245018 tgttgctgatttttccacatgaagaaggtggaca 9244985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 871 - 962
Target Start/End: Complemental strand, 9239174 - 9239083
Alignment:
Q  871 agtagcagcatcactaccatactaatttggaagaagcataagaatgattccatccctctgctcatgactaatgctgaaatggaacatgtatc 962  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9239174 agtagcagcatcactaccatactaatttggaagaagcataagaatgattccatccctctgctcatgactaatgctgaaatggaacatgtatc 9239083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 584 - 852
Target Start/End: Original strand, 9359247 - 9359515
Alignment:
Q  584 gaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaaa 683  Q
    |||||||||||||||||| |||||||| |||| | |||||||||| || ||||||||| |    ||||||||||  || ||||||||||||||| |||||    
T  9359247 gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgtagttgatttcctgcacatagtatttacctgaaaa 9359346  T
Q  684 caatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgttt 783  Q
    ||  ||||||   |||| ||||||||| ||||||||||| ||| ||||||||||| |   || ||| || ||| ||||||||||  |||||  |||||||    
T  9359347 cagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgttt 9359446  T
Q  784 gtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 852  Q
    |||||||| || |||||||||||| |||||| ||||||| ||||  ||||  |||||||||||||||||    
T  9359447 gtgattttgccgcatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtt 9359515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 586 - 806
Target Start/End: Original strand, 8945870 - 8946090
Alignment:
Q  586 ggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaaaca 685  Q
    ||||| || ||||||||||| ||||  ||||| |||||||||| || ||||||||||| ||||||||||||||| || |||| ||||||||| |||| ||    
T  8945870 ggaattgaagagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagca 8945969  T
Q  686 atgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtttgt 785  Q
       ||||| |||||| ||| ||||| ||||||||||| ||||||||||||||  | | ||||||||| ||||||||||| ||  |||  ||||||||  |    
T  8945970 gctttaacattgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggttgctggatcattcttaagtcggaagggatactttatgttgct 8946069  T
Q  786 gattttaccacatgaagaagg 806  Q
    |||||| ||||||||||||||    
T  8946070 gattttgccacatgaagaagg 8946090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 17457151 - 17457289
Alignment:
Q  20 aaggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtag 119  Q
    |||||||||||  |||||||||||||| |||||||| |||||||| |||| |||||||| |||||| ||  ||| ||  |||||||||| | ||||||||    
T  17457151 aaggggtggtacctgcacatgcgctccaacgcccaagtcaggtggaaaactaggagaatgtgaggttttagggataggatgaacttactcgaaattgtag 17457250  T
Q  120 tagagtctcctttagataggcataagggagtgtaatggg 158  Q
    |  |||| |||||| ||||| |||| |||||||||||||    
T  17457251 tgaagtcccctttatataggaataatggagtgtaatggg 17457289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 597 - 812
Target Start/End: Original strand, 9168414 - 9168629
Alignment:
Q  597 gcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaaacaatgttaacgtt 696  Q
    ||||||||| ||||  ||||| ||||||||||| |  ||||||||||  |||||||||||||| |||||||||||||||||| ||||||   ||| ||||    
T  9168414 gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgtt 9168513  T
Q  697 gtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtttgtgattttaccac 796  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |   || |||||| || |||||||| ||| |||||||||||||| | ||||| ||||    
T  9168514 gtgatgttgttttcacaggataactcgtacctcggatcaccacagtttgttggatcatttttaagtcggaacggatgttttatgtttctcattttgccac 9168613  T
Q  797 atgaagaaggtagaca 812  Q
    ||||||||||| ||||    
T  9168614 atgaagaaggtggaca 9168629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 8e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 583 - 805
Target Start/End: Complemental strand, 15912942 - 15912720
Alignment:
Q  583 cgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaa 682  Q
    ||||||||||||||||||||||||||||| |  |||| |||||||| || |||||||||||  || |||||||||  |  ||||||||| ||||| ||||    
T  15912942 cgaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgatttccaacacatagtacttacctgaaa 15912843  T
Q  683 acaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtt 782  Q
    |||   |||| ||||||| ||||||||| ||||||||||| || |||||||| ||| | |  ||||| || ||||||||||||||  |||||||||||||    
T  15912842 acagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggtcgctgggtcattcttaagtcgaaatggatgttttatgtt 15912743  T
Q  783 tgtgattttaccacatgaagaag 805  Q
      |||||||||| ||||||||||    
T  15912742 gctgattttaccgcatgaagaag 15912720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 13336317 - 13336515
Alignment:
Q  11 gtgagatgaaaggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttg 110  Q
    |||||| | ||||||||||| ||||| |||||| || || ||||| | |||||||||||||||||  |  || || | |  || ||| | ||||||||||    
T  13336317 gtgagacgtaaggggtggtacttgcaaatgcgccccaacacccaagttaggtgggaaacaaggaggttgagatgtttatgagatagaataaacttacttg 13336416  T
Q  111 gaattgtagtagagtctccttt-agataggcataagggagtgtaatgggcttcgagtcttattgggtcttactatataattgggtatttgataagtgga 208  Q
     ||||||| |||| || ||||| | ||||||||||||||||||| ||||||| |||  |||||||| ||||| |||||||||||  |||| ||||||||    
T  13336417 aaattgtaatagattccccttttatataggcataagggagtgtattgggcttggagctttattgggccttaccatataattgggcctttggtaagtgga 13336515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 25028970 - 25029118
Alignment:
Q  33 tgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagtagagtctccttt 132  Q
    |||||||| |||| || ||| || |||||||||||||||||||||| | |||| ||  |||||||  |||||||| |||||||||||| ||||| || ||    
T  25028970 tgcacatgtgctctgatgcctaagtcaggtgggaaacaaggagaatgtaaggttttagggagagaacgaacttacctggaattgtagtggagtccccctt 25029069  T
Q  133 agataggcataagggagtgtaatgggcttcgagtcttattgggtcttac 181  Q
      ||||||||  | ||||||||||| |||  ||| ||||||||||||||    
T  25029070 ctataggcatccgagagtgtaatggacttgaagttttattgggtcttac 25029118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 13320423 - 13320286
Alignment:
Q  24 ggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagtaga 123  Q
    |||||||  ||||||||| |||||||||| || ||| |||  ||||||||||     ||||| | ||||| ||| |||||||||||||||||||||| ||    
T  13320423 ggtggtacctgcacatgcactccgacgcctaagtcatgtgaaaaacaaggaggtcgagaggtttattggatagaatgaacttacttggaattgtagtgga 13320324  T
Q  124 gtctcctttagataggcataagggagtgtaatgggctt 161  Q
    || |||| || ||||||||||| ||||||| |||||||    
T  13320323 gtgtcctctatataggcataagagagtgtattgggctt 13320286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 13320000 - 13320134
Alignment:
Q  22 ggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagta 121  Q
    |||||||||  |||||| || ||||||||||||| ||||||||||| |||||||     ||| | | |  || ||| |||||||| || ||||||||||     
T  13320000 ggggtggtacctgcacaagcactccgacgcccaagtcaggtgggaatcaaggaggtcgagagatttatgagatagaatgaacttaattagaattgtagtg 13320099  T
Q  122 gagtctcctttagataggcataagggagtgtaatg 156  Q
    ||||  |||||  ||||||||||| ||||||||||    
T  13320100 gagttccctttgtataggcataagagagtgtaatg 13320134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 10553370 - 10553521
Alignment:
Q  22 ggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagta 121  Q
    |||||||||  |||||||| |||||||||||||| ||| ||||| || |||||| ||  ||| | | | ||| ||| |||| |||| || |||||||||     
T  10553370 ggggtggtacatgcacatgtgctccgacgcccaagtcatgtgggtaataaggaggatgagagatttatgggatagaatgaaattacctgaaattgtagtg 10553469  T
Q  122 gagtctcctttagataggcataagggagtgtaatgggcttcgagtcttattg 173  Q
    |||||||||||| ||||||||||||||||||||| || ||  ||||||||||    
T  10553470 gagtctcctttatataggcataagggagtgtaataggtttgaagtcttattg 10553521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 14939 - 15101
Alignment:
Q  22 ggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgtttt--ggagagattgaactta-cttggaattgta 118  Q
    |||||||||  ||||||| |||| ||||  |||| ||||||||||||||||||   | |||||||||||  ||| ||| || ||||| |||||| || ||    
T  14939 ggggtggtacctgcacatacgcttcgacatccaagtcaggtgggaaacaaggatcttgtgaggtgtttttgggatagaatggacttaacttggagtttta 15038  T
Q  119 gtagagtctcctttagataggcataagggagtgtaatgggcttcgagtcttattgggtcttac 181  Q
     | ||||| |||||| ||||||||||| |||||| |||||||| ||| |||||||||||||||    
T  15039 ctggagtcccctttatataggcataagagagtgttatgggcttggagccttattgggtcttac 15101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 16224890 - 16224768
Alignment:
Q  22 ggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagta 121  Q
    |||||||||  |||||||| ||||| || ||||| |||||||||||||||||||  | |||||| ||| ||| ||| || ||||||||| ||||| |||     
T  16224890 ggggtggtacctgcacatgtgctccaacacccaagtcaggtgggaaacaaggaggttgtgaggtttttgggatagaatggacttacttgaaattgcagtg 16224791  T
Q  122 gagtctcctttagataggcataa 144  Q
    |||| || |||| ||||||||||    
T  16224790 gagtgtcatttatataggcataa 16224768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University