View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_high_16 (Length: 478)
Name: NF12891_high_16
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_16 |
 | |
|
| [»] scaffold0631 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 63 - 459
Target Start/End: Complemental strand, 44112682 - 44112286
Alignment:
| Q |
63 |
tcatttgttcataggcaaaagttaacaaacacaattcgttaatgttttcaacattacaaaacatttgattagttaaatatgattagttatttacaccaag |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44112682 |
tcatttgttcataggcaaaagttaacaaacacaattcgttaatgttttcaacattacagaacatttgattagttaaatatgattagttatttacaccaag |
44112583 |
T |
|
| Q |
163 |
tcttactcttataacacgtaaaatgaatcaaagcataccagcaagctagaggtaacgtcctcataaccaagcttcttctcataggtaagttgaaagttaa |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44112582 |
tcttactcttataacacgtaaaatgaatcaaagcataccagcaagctagaggtaacgtcctcataaccaagcttcttctcataggtaagttgaaagttaa |
44112483 |
T |
|
| Q |
263 |
actcatcatgtaaaaatggtcaaggaacaacccagtcaacaacagcaggagcaacattgtgttgaaccctagtccataggtggagtaaaagttgggtagc |
362 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44112482 |
actcatcatgtaaaaatggtcagggaacaacccagtcaacaacagcaggagcaacgttgtgttgaaccctagtccataggtggagtaaaagttgggtagc |
44112383 |
T |
|
| Q |
363 |
gaatcctctttccaaacctatttttgactctaatatcaaaccttccattccccatccaaacaatggtaattcaagcaccaagcgctaacttgtagaa |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44112382 |
gaatcctctttccaaacctatttttgactctaatatcaaaccttccattccccatccaaacaatggtaatccaagcaccaagcgctaacttgtagaa |
44112286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 220 - 444
Target Start/End: Original strand, 7198 - 7424
Alignment:
| Q |
220 |
tcctcataaccaagcttcttctcataggtaagttgaaagttaaactcatcatgtaaaaatggtcaaggaacaacccagtcaacaacagcaggagcaacat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||| ||| ||||||| ||||||||||||| | ||| |||||| |
|
|
| T |
7198 |
tcctcataaccaagcttcttctcataggtaagctgaaagttatactcatcatgcataaaaggttggggaacaaaccagtcaacaacaaccggaacaacat |
7297 |
T |
|
| Q |
320 |
tgtgttgaaccct--agtccataggtggagtaaaagttgggtagcgaatcctctttccaaacctatttttgactctaatatcaaaccttccattccccat |
417 |
Q |
| |
|
|| | | |||| | | ||||| ||||| ||||| |||||||| |||| |||| | ||||||||||| || |||| ||||||||||||||||| ||||| |
|
|
| T |
7298 |
tgggctcaaccttgaattccattggtggcgtaaatgttgggtaacgaaccctcctaccaaacctattctttactcgaatatcaaaccttccatctcccat |
7397 |
T |
|
| Q |
418 |
ccaaacaatggtaattcaagcaccaag |
444 |
Q |
| |
|
||| ||||| |||| ||||||||||| |
|
|
| T |
7398 |
ccagacaattttaatccaagcaccaag |
7424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 227 - 444
Target Start/End: Original strand, 38896377 - 38896597
Alignment:
| Q |
227 |
aaccaagcttcttctcataggtaagttgaaagttaaactcatcatgta-aaaatggtcaaggaacaacccagtcaacaacagcaggagcaacattgtgtt |
325 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||| | |||| ||| ||||||| ||||||||||||| | ||| || ||||| | | |
|
|
| T |
38896377 |
aaccaagcttcttctcataggtaagctgaaagttatactcatcatgcataaaaaggttggggaacaaaccagtcaacaacaaccggaacagcattgggct |
38896476 |
T |
|
| Q |
326 |
gaaccct--agtccataggtggagtaaaagttgggtagcgaatcctctttccaaacctatttttgactctaatatcaaaccttccattccccatccaaac |
423 |
Q |
| |
|
|||| | | ||||| ||||| ||||| |||||||| |||| |||| | ||||||||||| || |||| ||||||||||||||||||||||||||| || |
|
|
| T |
38896477 |
caaccttgaattccattggtggcgtaaatgttgggtaacgaaccctcctaccaaacctattctttactcgaatatcaaaccttccattccccatccagac |
38896576 |
T |
|
| Q |
424 |
aatggtaattcaagcaccaag |
444 |
Q |
| |
|
||| ||||| ||||||||||| |
|
|
| T |
38896577 |
aattgtaatccaagcaccaag |
38896597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 220 - 444
Target Start/End: Complemental strand, 24324884 - 24324658
Alignment:
| Q |
220 |
tcctcataaccaagcttcttctcataggtaagttgaaagttaaactcatcatgtaaaaatggtcaaggaacaacccagtcaacaacagcaggagcaacat |
319 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||||||||||| |||||||||| | ||| || ||||||| ||||||||||||| | ||| |||||| |
|
|
| T |
24324884 |
tcctcacaaccaagtttcttctcatatgtaagttgaaagttatactcatcatgcataaaaggctggggaacaaaccagtcaacaacaaccggaacaacat |
24324785 |
T |
|
| Q |
320 |
tgtgttgaaccct--agtccataggtggagtaaaagttgggtagcgaatcctctttccaaacctatttttgactctaatatcaaaccttccattccccat |
417 |
Q |
| |
|
|| | | |||| | | ||||| ||||| ||||| |||||||| |||| |||| | ||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
24324784 |
tgggctcaaccttgaattccattggtggcgtaaatgttgggtaacgaaccctcctaccaaacctattctttactcgaatatcaaaccttccattccccat |
24324685 |
T |
|
| Q |
418 |
ccaaacaatggtaattcaagcaccaag |
444 |
Q |
| |
|
||| ||||| || || ||||||||||| |
|
|
| T |
24324684 |
ccagacaattgttatccaagcaccaag |
24324658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 13102706 - 13102775
Alignment:
| Q |
348 |
taaaagttgggtagcgaatcctctttccaaacctatttttgactctaatatcaaaccttccattccccat |
417 |
Q |
| |
|
|||| |||||||| ||||| ||||| |||||||| || |||| |||||||| |||||||||||| ||||| |
|
|
| T |
13102706 |
taaaggttgggtaacgaattctcttaccaaacctgttcttgattctaatattaaaccttccatttcccat |
13102775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 2269460 - 2269524
Alignment:
| Q |
353 |
gttgggtagcgaatcctctttccaaacctatttttgactctaatatcaaaccttccattccccat |
417 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || |||| | ||||||||||||||||||| ||||| |
|
|
| T |
2269460 |
gttgggtaacgaattctcttaccaaacctgttcttgattataatatcaaaccttccatttcccat |
2269524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 16797519 - 16797450
Alignment:
| Q |
348 |
taaaagttgggtagcgaatcctctttccaaacctatttttgactctaatatcaaaccttccattccccat |
417 |
Q |
| |
|
|||| |||||||| ||||| || || |||||| | || |||| ||||||||||||||||||||| ||||| |
|
|
| T |
16797519 |
taaaggttgggtaacgaattctattaccaaacatgttcttgattctaatatcaaaccttccatttcccat |
16797450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University