View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_2 (Length: 796)
Name: NF12891_high_2
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 708; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 19 - 788
Target Start/End: Original strand, 44750962 - 44751730
Alignment:
| Q |
19 |
ctgataacatagattgccttataactctgattacatcagtgagagacacaacaccaacaagcaaaccctcttgatcaaccacccaaactcgatgaacatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44750962 |
ctgataacatagattgccttataactctgattacatcagtgagagacacaacaccaacaagcaaaccctcttgatcaaccacccaaactcgatgaacatg |
44751061 |
T |
|
| Q |
119 |
gtttgtgaccgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaatatcattctgtgtatctgat |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44751062 |
gtttgcgaccgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaatatcattctgtgtatctgat |
44751161 |
T |
|
| Q |
219 |
gttgtgtacaaaggactagttgcaatttgttcagtgaatgcaagtgcacttattcctaaccatgatttcaatgtgtttatatagcatccccttaaatcag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44751162 |
gttgtgtacaaaggactagttgcaatttgttcagtgaatgcaagtgcacttattcctaaccatgatttcaatgtgtttatatagcatccccttaaatcag |
44751261 |
T |
|
| Q |
319 |
ttgcagaaaatgttccaacaagtttcctgcatctcccctgcaaccagattattgcattatgttagtattatatacaaa-attgtnnnnnnnntgaaaagc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
44751262 |
ttgcagaaaatgttccaacaagtttcctgcatctcccctgcaaccagattattgcattatgttagtattatatacaaagattgtaaaaaatatgaaaag- |
44751360 |
T |
|
| Q |
418 |
acataaggaaaagagttattgacaatgagaagacttgcattgatatgttgcttgtgatcatcatcgccaacatcagaggctctaacaattggaagtgcat |
517 |
Q |
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| T |
44751361 |
-cataaggaaaagagttaatgagaatgagaagacttgcattgatatgttgcttgtgatcatcatcgccaacatcagaggctctaacaattggaagtgcat |
44751459 |
T |
|
| Q |
518 |
ttaacatagcagctttcaagcacttgatggcatcgatgagttttgtgcgttcggtgatggcgtaaatcctttcggtgattgctcccaaatcttgaacaga |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
44751460 |
ttaacatagcagctttcaagcacttgatggcatcgatgagttttgtgcgttcggtgatggcgtaaatcctttcggtgatcgctcccaaatcttgaacgga |
44751559 |
T |
|
| Q |
618 |
atgtgaatgcagagtgctttgtagttcattgccgtgatctttcaagaaccgaagcacgtccatttgagtcagcatttggtagcttgaagaagattcaatg |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44751560 |
atgtgaatgcagagtgctttgtagttcattgccgtgatctttcaagaaccgaagcacgtccatttgagtcagcatttggtagcttgaagaagattcaatg |
44751659 |
T |
|
| Q |
718 |
agttcaactccagctgagacgttctctatttggctgtcggtaggtatcatagcgcgatgtacccctttgct |
788 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44751660 |
agttcaactccagctgagacgttctctatttggctgtcggtaggtatcatagcgcgatgtacccctttgct |
44751730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 44744323 - 44744596
Alignment:
| Q |
20 |
tgataacatagattgccttataactctgattacatcagtgagagacacaacaccaacaagcaaaccctcttgatcaaccacccaaactcgatgaacatgg |
119 |
Q |
| |
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||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44744323 |
tgataacattgattgccttataactctaatgacatcagtgagagacacaacacctacaagcaaaccctcttgatcaaccacccaaactcgatgaacatgg |
44744422 |
T |
|
| Q |
120 |
tttgtgaccgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaatatcattctgtgtatctgatg |
219 |
Q |
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|||| ||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |
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| T |
44744423 |
tttgcgaccgccttattgattacctcggacaaagtttattcagcatggcatgtcacaagctcccttctaggagtaccaatatcattatgtgtatcagatg |
44744522 |
T |
|
| Q |
220 |
ttgtgtacaaaggactagttgcaatttgttcagtgaatgcaagtgcacttattcctaaccatgatttcaatgtg |
293 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||| || || ||||||||| |||| |||||||||||||||||| |
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| T |
44744523 |
ttgtgtacaaaggacttgttgcaatttgtttagtaaaagctagtgcacttgttcccaaccatgatttcaatgtg |
44744596 |
T |
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