View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_24 (Length: 429)
Name: NF12891_high_24
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 71 - 421
Target Start/End: Original strand, 35965391 - 35965742
Alignment:
| Q |
71 |
tggtgaatattcgcggttaataggggagaggaccaaatatttaacaacttggactgtttatgagtctatggaactaaacaattcacgtagatgtctagat |
170 |
Q |
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| T |
35965391 |
tggtgaatattcgcggttaataggggagaggaccaaatatttaacaacttggactgtttatgagtctatggaactaaacaatttacgtagatgtctagat |
35965490 |
T |
|
| Q |
171 |
tatgtgtcagaaaaacacaaacatttaggttagctgaaaataaacacacactttcagttgggtggttgagtccagctggaatagtaaatgtatgtttggt |
270 |
Q |
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| T |
35965491 |
tatgtgtcagaaaaacacaaacatttaggttagctgaaaataaacacacactttcagttgggtggttgagtccagctggaatagtaaatgtatgtttggt |
35965590 |
T |
|
| Q |
271 |
ttcactttttattagtataattgattttgtatttagaattgattattaacacctaacttggagggtggtgggtcatctccttcctgctgaccaatgagat |
370 |
Q |
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| T |
35965591 |
ttcactttttgttagtataattgattttgtatttagaattgattataaacacctaacttggagggtggtgggtcatctccttcctgctgaccaatgagat |
35965690 |
T |
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| Q |
371 |
ttcaacgattataaattatagcttcgttctcaccacac-tttgatgtccatc |
421 |
Q |
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| T |
35965691 |
ttcaacgattataaattatagcttcgttctcaccacacgtttgatgtccatc |
35965742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49910479 - 49910513
Alignment:
| Q |
1 |
tgttgttggcataggaaaaaagagagtttttgtgt |
35 |
Q |
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| T |
49910479 |
tgttgttggcataggaaaaaagagtgtttttgtgt |
49910513 |
T |
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