View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_high_29 (Length: 396)

Name: NF12891_high_29
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_high_29
NF12891_high_29
[»] chr7 (5 HSPs)
chr7 (1-385)||(35354622-35355006)
chr7 (213-385)||(35370278-35370450)
chr7 (210-385)||(35380837-35381012)
chr7 (1-130)||(35379126-35379255)
chr7 (1-130)||(35369767-35369896)
[»] chr4 (4 HSPs)
chr4 (2-130)||(19630480-19630608)
chr4 (2-130)||(19684189-19684317)
chr4 (212-385)||(19684483-19684656)
chr4 (212-385)||(19630170-19630344)
[»] chr8 (2 HSPs)
chr8 (10-108)||(2258460-2258558)
chr8 (5-108)||(2280450-2280553)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 35354622 - 35355006
Alignment:
Q  1 attgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttca 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  35354622 attgcatgctggaccagtggagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcactctcatcaccattcttca 35354721  T
Q  101 attgttactgagcctatcacttgtatgaacnnnnnnnnnnnnnnnnnngcatgcttgatttgtgagtgtccaaattttggtgtcaaaataacacaacttt 200  Q
    ||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354722 attgttactgagcctatcacttgtatgaactttttttctttcatttttgcatgcttgatttgtgagtgtccaaattttggtgtcaaaataacacaacttt 35354821  T
Q  201 cttatgtattttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354822 cttatgtattttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaa 35354921  T
Q  301 tcttctgtggctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttccta 385  Q
    ||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35354922 tcttctgtggctgcactatatggctatgtctttttcattgatttcatgaacaacatgggtcattgcaactttgagttcattccta 35355006  T

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Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 213 - 385
Target Start/End: Original strand, 35370278 - 35370450
Alignment:
Q  213 gacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggct 312  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35370278 gacagctgtggcacacccatttgccgagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct 35370377  T
Q  313 gcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttccta 385  Q
    ||||||| ||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35370378 gcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttccta 35370450  T

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Target: chr7; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 210 - 385
Target Start/End: Original strand, 35380837 - 35381012
Alignment:
Q  210 tttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtg 309  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  35380837 tttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtg 35380936  T
Q  310 gctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttccta 385  Q
    |||||| | | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35380937 gctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttccta 35381012  T

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Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 35379126 - 35379255
Alignment:
Q  1 attgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttca 100  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||    
T  35379126 attgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttca 35379225  T
Q  101 attgttactgagcctatcacttgtatgaac 130  Q
    ||||| ||||||||||||||||||||||||    
T  35379226 attgtcactgagcctatcacttgtatgaac 35379255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 35369767 - 35369896
Alignment:
Q  1 attgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttca 100  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||    
T  35369767 attgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttca 35369866  T
Q  101 attgttactgagcctatcacttgtatgaac 130  Q
    ||||| ||||||||| ||||||||||||||    
T  35369867 attgtcactgagcctgtcacttgtatgaac 35369896  T

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Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 19630608 - 19630480
Alignment:
Q  2 ttgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaa 101  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  19630608 ttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatactctcgttaccattctcatcatcattcttcaa 19630509  T
Q  102 ttgttactgagcctatcacttgtatgaac 130  Q
    |||| || |||||||||||||||||||||    
T  19630508 ttgtcaccgagcctatcacttgtatgaac 19630480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 19684189 - 19684317
Alignment:
Q  2 ttgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaa 101  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||    
T  19684189 ttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatattctcgttaccattctcaccatcattcttcaa 19684288  T
Q  102 ttgttactgagcctatcacttgtatgaac 130  Q
    |||| ||||| ||||||||| ||||||||    
T  19684289 ttgtcactgaacctatcactggtatgaac 19684317  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 385
Target Start/End: Original strand, 19684483 - 19684656
Alignment:
Q  212 tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggc 311  Q
    ||||||| |||||||| |||||||| |||   ||| ||||||| |||||||||  ||||||||||||||||||||||||||| ||||||||   |||||     
T  19684483 tgacagcggtgacacatccatttgctgagatgttggcatatttcacactttttcttataccaatgttgacaacattgttcatgaaaaaatcgagtgtggt 19684582  T
Q  312 tgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttccta 385  Q
    |||| | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19684583 tgcattgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttccta 19684656  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 212 - 385
Target Start/End: Complemental strand, 19630344 - 19630170
Alignment:
Q  212 tgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttga-caacattgttcatcaaaaaatcttctgtgg 310  Q
    |||||||||||| |||||||||||| |||   ||| ||||||| |||||||||  ||| ||||| |||| ||||| ||||| | |||||||| ||| | |    
T  19630344 tgacagctgtgatacacccatttgctgagatattggcatatttcacacttttttttatcccaatattgagcaacaatgttcgtaaaaaaatcgtctattg 19630245  T
Q  311 ctgcactatttggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttccta 385  Q
    ||||  | | ||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19630244 ctgcggtgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttccta 19630170  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 2258558 - 2258460
Alignment:
Q  10 tggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgttac 108  Q
    |||||||||||||||| | ||||||||| |||| |||||||||||||| ||||  || || ||| | |||||||||||||| |||||||| ||||||||    
T  2258558 tggaccagtggagtttctttactattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgttac 2258460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 2280553 - 2280450
Alignment:
Q  5 catgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattg 104  Q
    ||||||||| |||| || ||| | || |||||| |||| |||||||||||||| ||||  || || ||| | |||||||||||||| |||||||| ||||    
T  2280553 catgctggagcagttgaatttctttattattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattg 2280454  T
Q  105 ttac 108  Q
    ||||    
T  2280453 ttac 2280450  T

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