View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_34 (Length: 378)
Name: NF12891_high_34
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 41981662 - 41982009
Alignment:
| Q |
17 |
agaaatggggtagttgaatcattgtgtagtgttgtgtgttagttgaagaaaaaagtgagaatgagagcggtttgggacataaaggagggaaatgtctgtg |
116 |
Q |
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| T |
41981662 |
agaaatggggtagttgaatcattgtgtactgttgtgtgttagttgaagaaaaaagtgagaatgagagcggtttgggacataaaggagggaaatgtctgtg |
41981761 |
T |
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| Q |
117 |
tattgtatgaagaggcgagattagcgggagaattatgttgaatttttgctcaatgattcttttttgagtcaagtcaaacaaacattttctttttctacta |
216 |
Q |
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| T |
41981762 |
tattgtatgaagaggcgagattagcgggagaattatgttgaatttttgcttaatgattcttttttgagtcaagtcaaacaaacattttctttttctacta |
41981861 |
T |
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| Q |
217 |
aacaagaaaactctttcttcttcatctttcagtttcactactttgaaacaacaattttgcctaattaaccaataaatagttagttaatattggtagcaag |
316 |
Q |
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| T |
41981862 |
aacaagaaaactctttcttcttcatctttcagtttcactactttgaaacaacaattttgcctaattaaccaataaatagttagttaatattggtagcaag |
41981961 |
T |
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| Q |
317 |
tgaatgaataaatgaaattatattataaagtttcgattttaaatggcc |
364 |
Q |
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| T |
41981962 |
tgaatgaataaatgaaattatattataaagtttcgattttaaatggcc |
41982009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 46317410 - 46317439
Alignment:
| Q |
17 |
agaaatggggtagttgaatcattgtgtagt |
46 |
Q |
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| T |
46317410 |
agaaatggggtagttgaatcattgtgtagt |
46317439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 6840540 - 6840510
Alignment:
| Q |
17 |
agaaatggggtagttgaatcattgtgtagtg |
47 |
Q |
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| T |
6840540 |
agaaatggggtagttgaatcattgtgtagtg |
6840510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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