View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_35 (Length: 374)
Name: NF12891_high_35
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 26899654 - 26899990
Alignment:
| Q |
19 |
gaccagggatactttgggtgttacaattaaataagttttgtcaaagaggtgcaattaggatttatgaggtgttactnnnnnnnnnntcttaaaatatttt |
118 |
Q |
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| T |
26899654 |
gaccatggatactttgggtgttacaattaaataagttttgtcaaagaggtgcaattaggatttatggggtgttactagaaaaaaaatcttataatatttt |
26899753 |
T |
|
| Q |
119 |
caaactatcgatgaaaaatacatcaaaatagatgcattttcaaattccatccattagaaaatgctaattaaggaacatcctaaacatggctaatccttac |
218 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
26899754 |
caaactatcgatgaaaaatacattaaaatagatctattttcaaattccatccattagaaaatgttaattaaggaacatcctaaacatgactaatccttac |
26899853 |
T |
|
| Q |
219 |
catgactagtttcatattgcacaaaagatttaagctgaaaccatatatctcagcaccgtcagnnnnnnncaattttctcatgatcttatggcacatccaa |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
26899854 |
catgactagtttcatattgcacaatagatttaagctgaaaccatatatctcagcaccgtcagaaaaaaacaattttctcatgatcttatgacacatccaa |
26899953 |
T |
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| Q |
319 |
accaatgtttgtatgttacatatctgtcccacatgcc |
355 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26899954 |
accaatgtttgtatgttacatatctgtcccacatgcc |
26899990 |
T |
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