View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_high_38 (Length: 365)
Name: NF12891_high_38
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 22 - 355
Target Start/End: Complemental strand, 36739735 - 36739396
Alignment:
| Q |
22 |
aaccaggctgttttcactgaaattttagcg------ggagctttggaaggcgacaagttttatcagaagattaggtatattttgtttctctactaactgt |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
36739735 |
aaccaggctgttttcattgaaattttagcactgacaggagctttggaaggcgacaagttttatcaaaatattaggtatattttgtttctctactaactgt |
36739636 |
T |
|
| Q |
116 |
gatgtctgtaataaacctcccctaaagctgcaacaggtttattaaggttttgactgattgagaataactcttgtttctaagtttcggtcttttatacact |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
36739635 |
gatgtctgtaataaaccccccctaaagctgcagtaggtttattaatgttttgactgattgagaataacttttgtttctaagtttctgtcttttatacact |
36739536 |
T |
|
| Q |
216 |
tcttaatatgatatccattcttaaggtgtgtcctagtgatattttatagttgtcttgaatgtgtggttgtagataaactttcccctcggtacttcttgaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
36739535 |
tcttaatatgatatccattcttaaggtgtgtcctagtgatattttatagttgtcttgaatgtgtgatagtagataaactttcccctcggtacttcttgaa |
36739436 |
T |
|
| Q |
316 |
aaattgacataattgtaaacaagtatctgttcttctctct |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36739435 |
aaattgacataattgtaaacaagtatctgttcttctctct |
36739396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 36738107 - 36737900
Alignment:
| Q |
22 |
aaccaggctgttttcactgaaattttagc------gggagctttggaaggcgacaagttttatcagaagattaggtatattttgtttctctactaactgt |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
36738107 |
aaccaggctgttttcaatgaaattttagcactgacgggagctttggaaggcgacaagttttatcagaagatt-gatatatttcgtttctctactaactgt |
36738009 |
T |
|
| Q |
116 |
gatgtctgtaataaacctcccctaaagctgcaacaggtttattaaggttttgactgattgagaataactcttgtttctaagtttcggtcttttatacact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36738008 |
gatgtctgtaataaacctcccctaaagctgcagcaggtttattaatgttttgattgattgagaataactcttgtttctaagtttctgtcttttatacact |
36737909 |
T |
|
| Q |
216 |
tcttaatat |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
36737908 |
tcttaatat |
36737900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 36722202 - 36722133
Alignment:
| Q |
22 |
aaccaggctgttttcactgaaattttag------cgggagctttggaaggcgacaagttttatcagaaga |
85 |
Q |
| |
|
||||||| |||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
36722202 |
aaccaggttgttttcactgaaattttagaactaacaggagctttagaaggcgacaagttttatcagaaga |
36722133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 36737903 - 36737866
Alignment:
| Q |
92 |
atattttgtttctctactaactgtgatgtctgtaataa |
129 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36737903 |
atattttgtttctctgctaactgtgatgtctgtaataa |
36737866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 36739326 - 36739286
Alignment:
| Q |
96 |
tttgtttctctactaactgtgatgtctgtaataaacctccc |
136 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
36739326 |
tttgtttctctgctaactgtgatgcctgtaataaacctccc |
36739286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University