View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_52 (Length: 297)
Name: NF12891_high_52
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 7333660 - 7333381
Alignment:
| Q |
1 |
tttggaaagtgtatgtctggaaaaagaaggtggcacgaatattctctaggtggttaaaggagagagtatgtaatgaggtgatagggagtggagacttatc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333660 |
tttggaaagtttatgtctggaaaaagaaggtggcacgaatattctctaggtggttaaaggagagagtatgtaatgaggtgatagggagtggagacttatc |
7333561 |
T |
|
| Q |
101 |
tcgggtaggagtcatagactctggtatttccctttgttaattcttttgttgctgtcagagcttttagctcatacttccatcaataaaatctctattctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333560 |
tcgggtaggagtcatagactctggtatttccctttgttaattcttttgttgctgtcagagcttttagctcatacttccatcaataaaatctctattctac |
7333461 |
T |
|
| Q |
201 |
tgatacttaagttttcggtttctatcattttctagatatataagaaaaaacaaaattcattttaaagttcggttgtaaaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333460 |
tgatacttaagttttcggtttctatcattttctagatatataagaaaaaacaaaattcattttaaagttcggttgtaaaa |
7333381 |
T |
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