View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_53 (Length: 292)
Name: NF12891_high_53
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 229037 - 229305
Alignment:
| Q |
9 |
agcataggccagttaccattctcttatttaggagttcccattttcaaagggaaacctaaatcattgtatttccaacctttagcagacaagatcaaactaa |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
229037 |
agcattggccagttaccattctcttatttaggagttcccattttcaaagggaaacctaaatcattgcatttccaacctttagcagacaagatcaaactaa |
229136 |
T |
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| Q |
109 |
agcttagtgcttggaaagcctcattactatccatttatggtagaattcagctagtaaagtcagtgattcaaggaatgttgatacatagtataactgttta |
208 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229137 |
agcttagtgcttggaaagcctcattactgtccatttatggtagaattcagctagtaaagtcagtgattcaaggaatgttgatacatagtataactgttta |
229236 |
T |
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| Q |
209 |
ttcttggcccatttcctcattaaaggatctggaaagatgtataaaaaatttcatttggagtgaggatat |
277 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
229237 |
ttcttggcccatttcttcattaaaggatctggaaagatgtataaaaaatttcatctggagtgaggatat |
229305 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 43580323 - 43580381
Alignment:
| Q |
42 |
gttcccattttcaaagggaaacctaaatcattgtatttccaacctttagcagacaagat |
100 |
Q |
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| T |
43580323 |
gttcccattttcaaagggaaacctaaagctttgtattttctacccatagctgacaagat |
43580381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 50560842 - 50560805
Alignment:
| Q |
31 |
cttatttaggagttcccattttcaaagggaaacctaaa |
68 |
Q |
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|||||||||||||| | ||||||||||||||||||||| |
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| T |
50560842 |
cttatttaggagtttctattttcaaagggaaacctaaa |
50560805 |
T |
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