View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_55 (Length: 286)
Name: NF12891_high_55
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 54567099 - 54567353
Alignment:
| Q |
19 |
gattcatcaccaacgttatcggttttagtatttggcatacaagtcttcacacaacttttggtcatcctccagaaaatatgagtaattgtttcaagttgtt |
118 |
Q |
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| T |
54567099 |
gattcatcaccaacgttatcggttttagtatttggcatacaagtcttcacacaacttttggtcatcctccagaaaat--gagtaattgtttcaagttgtt |
54567196 |
T |
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| Q |
119 |
gcacttttgttttcaatcccaacatttagattccaccacaattacattcatgttgatacaaatgttctcttttattggaacaaaagtctataagcacttg |
218 |
Q |
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| T |
54567197 |
gcacttttgttttcaatcccaacatttagattccaccacaattacattcatgttgatacaaatgttctcttttattggaacaaaagtctataagcacttg |
54567296 |
T |
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| Q |
219 |
ttggatgatatccaacacatatcattgctttactcttgtcttgtagctttttccttt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54567297 |
ttggatgatatccaacacatatcattgctttactcttgtcttgtagctttctccttt |
54567353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 54572064 - 54572176
Alignment:
| Q |
19 |
gattcatcaccaacgttatcggttttagtatttggcatacaagtcttcacacaacttttggtcatcctccagaaaatatgagt-aattgtttcaagttgt |
117 |
Q |
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| T |
54572064 |
gattcatcatcaacgttatcaacttaagcatttggcctacatgtcttcacacaacttttggtcatcctccagaaa--atgagtaaattgtttcaagttgt |
54572161 |
T |
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| Q |
118 |
tgcacttttgttttc |
132 |
Q |
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| T |
54572162 |
ggcacttttgttttc |
54572176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 54576628 - 54576735
Alignment:
| Q |
45 |
agtatttggcatacaagtcttcacacaacttttggtcatcctccagaaaatatgagtaattgtttcaagttgttgcacttttgttttcaatcccaacatt |
144 |
Q |
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| T |
54576628 |
agtatttggcatacctgtcttcacaca-cttttgctcatcctccaaaaaat--gagtaattgtttcaggttgttgcacttttgttttcagttctaatagt |
54576724 |
T |
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| Q |
145 |
tagattccacc |
155 |
Q |
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| T |
54576725 |
tagattccacc |
54576735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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