View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_58 (Length: 281)
Name: NF12891_high_58
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 50110293 - 50110037
Alignment:
| Q |
18 |
cagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaacta |
117 |
Q |
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| T |
50110293 |
cagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaacta |
50110194 |
T |
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| Q |
118 |
ctactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctcctaccctatctgtacacc |
217 |
Q |
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| T |
50110193 |
ctactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctcctaccctatctgtacacc |
50110094 |
T |
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| Q |
218 |
ctaaactatgaggctcatattagtggatccccaattgctaggcctcttttcatctca |
274 |
Q |
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| T |
50110093 |
ctaaactatgaggctcatattagtggagccccaattgctaggcctcttttcttctca |
50110037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 47 - 274
Target Start/End: Complemental strand, 50120254 - 50120027
Alignment:
| Q |
47 |
actgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagt |
146 |
Q |
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| T |
50120254 |
actgaagagctttgtaataggtggattgaagttggtgctttctatcctttctcgagggatcattcaagtgtcatttcccctagacaagaactttaccaat |
50120155 |
T |
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| Q |
147 |
gggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggatc |
246 |
Q |
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| T |
50120154 |
gggagtcagtagctgaatcagctagaaatgccttggggatgaggtataagcttctaccctatttttacacaataaactacgaggctcatattagtggagc |
50120055 |
T |
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| Q |
247 |
cccaattgctaggcctcttttcatctca |
274 |
Q |
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| T |
50120054 |
tccaattgctaggcctcttttcttctca |
50120027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 23934514 - 23934759
Alignment:
| Q |
23 |
atatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactact |
122 |
Q |
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| T |
23934514 |
atatgtggattttacccacaaccaactgaagaactatgcaatagatggattgaagttggtgctttctacccattttcaagagatcatgcaaactactact |
23934613 |
T |
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| Q |
123 |
ctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctcctaccctatctgtacaccctaaa |
222 |
Q |
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| T |
23934614 |
ccccgagacaagagctttaccaatgggattcagtagctcaatcagcaagaaatgctttaggtataaggtacaagattctaccgtatctttacaccttaaa |
23934713 |
T |
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| Q |
223 |
ctatgaggctcatattagtggatccccaattgctaggcctcttttc |
268 |
Q |
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|||||| |||||| |||||||||| |||||||| || || |||||| |
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| T |
23934714 |
ctatgaagctcatgttagtggatcaccaattgcaagaccacttttc |
23934759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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