View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_high_61 (Length: 268)
Name: NF12891_high_61
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_61 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 42803170 - 42803414
Alignment:
| Q |
19 |
aaagaggccttgaacaagaccaagttctcatttccaatttcatttccctcgccaacacactttccatttccactctctcatattccacagcggttttcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42803170 |
aaagaggccttgaacaagaccaagttctcatttccaatttcatttccctcgccaacacactttccatttccactcgctcatattccacagcggttttcaa |
42803269 |
T |
|
| Q |
119 |
ccgcgttctcaatccctctacattcctctggaacactttcattagaacacattgtcaaagtagcttcttttctgatacaatttccgcttttattcgcatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42803270 |
ccgcgttctcaatccctctacattcctctggaacactttcattagaacccattgtcaaagtagcttcttttctgatacaatttccgcctttattcgcatg |
42803369 |
T |
|
| Q |
219 |
aaagcggaaggggctgtgcctgatagttacacttacccttctgtg |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42803370 |
aaagcggaaggggctgtgcctgatagttacacttacccttctgtg |
42803414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 42760768 - 42761012
Alignment:
| Q |
19 |
aaagaggccttgaacaagaccaagttctcatttccaatttcatttccctcgccaacacactttccatttccactctctcatattccacagcggttttcaa |
118 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42760768 |
aaagaggccttgaacaagaccagttcctcatttccaatttcatttcactcgccaacacactttccatttccactctctcatattccacagcggttttcaa |
42760867 |
T |
|
| Q |
119 |
ccgcgttctcaatccctctacattcctctggaacactttcattagaacacattgtcaaagtagcttcttttctgatacaatttccgcttttattcgcatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42760868 |
ccgcgttctcaatccctctacattcctctggaacactttcattagaacacattgtcaaagtagcttcttttctgatacaatttccgcttttattcgcatg |
42760967 |
T |
|
| Q |
219 |
aaagcggaaggggctgtgcctgatagttacacttacccttctgtg |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42760968 |
aaagcggaaggggctgtgcctgatagttacacttacccttctgtg |
42761012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University