View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12891_high_62 (Length: 267)
Name: NF12891_high_62
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_62 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 16911564 - 16911317
Alignment:
| Q |
2 |
gaattaattactaattacctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaactagtccatccctacag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16911564 |
gaattaattactaattacctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaactagtccatctctacag |
16911465 |
T |
|
| Q |
102 |
tttctcatggaaacatggtcaatccaaatattgctagagccaaaaattgaaattccatcaccatcactcatagtcctttgaccaaaatggtcctgaccat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16911464 |
tttctcatggaaacatggtcaatccaaatattgctagagccaaaaattgaaattccatcaccatcactcatagtcctttgaccaaaatggtcctgaccat |
16911365 |
T |
|
| Q |
202 |
ctctaataagtccaccacttccaaccacgatgtcaaaaattttgattc |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16911364 |
ctctaataagtccaccacttccaaccacgatgtcaaaaattttgattc |
16911317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 16915969 - 16915724
Alignment:
| Q |
2 |
gaattaattactaattacctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaactagtccatccctacag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
16915969 |
gaattaattactaattacctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaatgagtccatctctgcag |
16915870 |
T |
|
| Q |
102 |
tttctcatggaaacatggtcaatccaaatattgctagagccaaaaattgaaattccatcaccatcactcatagtcctttgaccaaaatggtcctgaccat |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| || || |
|
|
| T |
16915869 |
tttctcatggaaacatggtcaatccaaatatggcttgagccaaaaattgaaattccatcaccatcactaatagtccttagaccataatggtcctcactat |
16915770 |
T |
|
| Q |
202 |
ctctaataagtccaccacttccaaccacgatgtcaaaaattttgat |
247 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
16915769 |
ctctaacaagtccaccacttccaaccataatgtcataaattttgat |
16915724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 25007053 - 25007205
Alignment:
| Q |
18 |
acctcgttgtgatctgtgaaatggctattggagatggtaatagcagtggatcccataatggcatcaactagtccatccctacagtttctcatggaaacat |
117 |
Q |
| |
|
||||| ||||| || ||||| || || || |||||||||||||||||||| ||||| || ||||||| | ||||| |||| |||||||||||||||| |
|
|
| T |
25007053 |
acctcattgtggtcagtgaagtgactgttagagatggtaatagcagtggaacccattatagcatcaatcaaaccatcagtacaatttctcatggaaacat |
25007152 |
T |
|
| Q |
118 |
ggtcaatccaaatattgctagagccaaaaattgaaattccatcaccatcactc |
170 |
Q |
| |
|
| |||||||||| ||| |||| ||||| || ||||| ||||||||||||||| |
|
|
| T |
25007153 |
gatcaatccaaacattactagcaccaaagatggaaataccatcaccatcactc |
25007205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University