View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_high_69 (Length: 252)

Name: NF12891_high_69
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_high_69
NF12891_high_69
[»] chr7 (4 HSPs)
chr7 (18-247)||(7237750-7237976)
chr7 (37-133)||(23113855-23113951)
chr7 (55-152)||(29428946-29429043)
chr7 (181-216)||(23113974-23114009)
[»] scaffold0097 (1 HSPs)
scaffold0097 (18-247)||(21340-21566)
[»] chr8 (4 HSPs)
chr8 (18-247)||(22535888-22536114)
chr8 (18-247)||(25993809-25994035)
chr8 (18-247)||(22531203-22531429)
chr8 (105-154)||(36549387-36549436)
[»] chr5 (3 HSPs)
chr5 (18-247)||(13191634-13191860)
chr5 (118-152)||(16597673-16597707)
chr5 (76-136)||(4943585-4943645)
[»] chr2 (2 HSPs)
chr2 (18-247)||(20717503-20717729)
chr2 (76-152)||(28219076-28219152)
[»] chr6 (3 HSPs)
chr6 (18-247)||(33091134-33091361)
chr6 (55-152)||(19694555-19694652)
chr6 (51-152)||(10871257-10871358)
[»] chr3 (7 HSPs)
chr3 (18-247)||(49368282-49368512)
chr3 (63-247)||(20983273-20983453)
chr3 (63-153)||(14567889-14567979)
chr3 (65-127)||(17575791-17575853)
chr3 (113-153)||(35231809-35231849)
chr3 (76-152)||(42029280-42029356)
chr3 (99-152)||(40024845-40024898)
[»] chr1 (4 HSPs)
chr1 (18-247)||(30190721-30190937)
chr1 (23-216)||(31991576-31991765)
chr1 (55-136)||(19337655-19337736)
chr1 (113-152)||(35306754-35306793)
[»] scaffold0402 (1 HSPs)
scaffold0402 (55-136)||(717-798)
[»] scaffold0039 (1 HSPs)
scaffold0039 (76-152)||(56974-57050)
[»] chr4 (2 HSPs)
chr4 (111-152)||(48084775-48084816)
chr4 (76-152)||(41809887-41809963)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 7237976 - 7237750
Alignment:
Q  18 atataataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaattt 116  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7237976 atataataaaatttcattgtttggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccattctatatcactcaatccttcaattt 7237877  T
Q  117 ctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  7237876 ctcattcccccaaatttgggaggtatccaatggaataaaacttgtgtctttaaattttac----tattctaccctcattttatttgcctcttcctctact 7237781  T
Q  217 tgatcataattttcaacacgttcttctctct 247  Q
    ||||||||||||||||||||||||| |||||    
T  7237780 tgatcataattttcaacacgttcttttctct 7237750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 23113855 - 23113951
Alignment:
Q  37 ttggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaattt 133  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| ||||||||| |||||||||||||| ||||||||||    
T  23113855 ttggattgatgggatgtaaatggaatggaatggaacacaatggaaccaattccattcaataccactcaatctttcaatttctcatttcccccaattt 23113951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 29428946 - 29429043
Alignment:
Q  55 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    ||||||| |||||| ||||  |||||||| ||||||||| ||| |||||  || | |||||| |||||||| ||||||||||  ||||||||||||||    
T  29428946 aatggaatggaatgaaacatgatggaatccattccatcccatagcactctctcttccaatttatcattccctccaatttggggtgtatgcaatggaat 29429043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 23113974 - 23114009
Alignment:
Q  181 tattctaccctcattttatttgcctcttcctctact 216  Q
    ||||||||||||||||||||||||||||||||||||    
T  23113974 tattctaccctcattttatttgcctcttcctctact 23114009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 21566 - 21340
Alignment:
Q  18 atataataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaattt 116  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||    
T  21566 atataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaattt 21467  T
Q  117 ctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||    
T  21466 ctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctact 21371  T
Q  217 tgatcataattttcaacacgttcttctctct 247  Q
      |||| |||||||||||||||||| |||||    
T  21370 caatcacaattttcaacacgttcttttctct 21340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 22536114 - 22535888
Alignment:
Q  18 atataataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaattt 116  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||    
T  22536114 atataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaattt 22536015  T
Q  117 ctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||    
T  22536014 ctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctact 22535919  T
Q  217 tgatcataattttcaacacgttcttctctct 247  Q
      |||| |||||||||||||||||| |||||    
T  22535918 caatcacaattttcaacacgttcttttctct 22535888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 25994035 - 25993809
Alignment:
Q  18 atataataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaattt 116  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||    
T  25994035 atataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaattt 25993936  T
Q  117 ctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||    
T  25993935 ctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctact 25993840  T
Q  217 tgatcataattttcaacacgttcttctctct 247  Q
      |||| |||||||||||||||||| |||||    
T  25993839 caatcacaattttcaacacgttcttttctct 25993809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 22531429 - 22531203
Alignment:
Q  18 atataataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaattt 116  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||    
T  22531429 atataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaattt 22531330  T
Q  117 ctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||    
T  22531329 ctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctact 22531234  T
Q  217 tgatcataattttcaacacgttcttctctct 247  Q
      |||| |||||| ||||||||||| |||||    
T  22531233 caatcacaattttaaacacgttcttttctct 22531203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 36549436 - 36549387
Alignment:
Q  105 atccttcaatttctcattccccccaatttgggaggtatgcaatggaataa 154  Q
    ||||||||||||||| ||||||||||||  ||  ||||||||||||||||    
T  36549436 atccttcaatttctctttccccccaattcagggtgtatgcaatggaataa 36549387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 13191860 - 13191634
Alignment:
Q  18 atataataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaattt 116  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||    
T  13191860 atataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaattt 13191761  T
Q  117 ctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||    
T  13191760 ctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctact 13191665  T
Q  217 tgatcataattttcaacacgttcttctctct 247  Q
      |||| |||||||||||||||||| |||||    
T  13191664 caatcacaattttcaacacgttcttttctct 13191634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 16597707 - 16597673
Alignment:
Q  118 tcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||||||||||||| ||||||||||||||||||    
T  16597707 tcattccccccaatttaggaggtatgcaatggaat 16597673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 4943585 - 4943645
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 136  Q
    |||||| | ||||||||| ||| |||||| |||||||||||  |||||| |||||||||||    
T  4943585 atggaacccattccatccaataccactcattccttcaattttccattccacccaatttggg 4943645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 20717729 - 20717503
Alignment:
Q  18 atataataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaattt 116  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||    
T  20717729 atataataaaattccattgtttggattgatgggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaattt 20717630  T
Q  117 ctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||    
T  20717629 ctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctact 20717534  T
Q  217 tgatcataattttcaacacgttcttctctct 247  Q
      |||| |||||||||||||||||| |||||    
T  20717533 caatcacaattttcaacacgttcttttctct 20717503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 28219076 - 28219152
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  28219076 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 28219152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 33091134 - 33091361
Alignment:
Q  18 atataataaaattccattgtt-ggattgatggg-atgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatt 115  Q
    ||||||||||||||||||||| ||||||||||| |||||  ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||    
T  33091134 atataataaaattccattgtttggattgatggggatgtacgtggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatt 33091233  T
Q  116 tctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctac 215  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| ||||||||||||||||||||||    
T  33091234 tctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctac 33091329  T
Q  216 ttgatcataattttcaacacgttcttctctct 247  Q
    |  |||| |||||||||||||||||| |||||    
T  33091330 tcaatcacaattttcaacacgttcttttctct 33091361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 19694652 - 19694555
Alignment:
Q  55 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    ||||||| ||||||||||| ||||||||| ||||||||| ||  ||   |||||||| |||| |||||||||||||||||||  | ||||||||||||    
T  19694652 aatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattccccccaatttggggtgcatgcaatggaat 19694555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 10871257 - 10871358
Alignment:
Q  51 tgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatgga 150  Q
    ||||| ||||| | ||||||||| ||||||| | ||| ||||| ||| |||||| || | ||| || ||||||||| |||||||||| ||||||||||||    
T  10871257 tgtaattggaatgaaatggaacataatggaacccatttcatccaataccactcactcttccaaattttcattcccctcaatttgggatgtatgcaatgga 10871356  T
Q  151 at 152  Q
    ||    
T  10871357 at 10871358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 49368512 - 49368282
Alignment:
Q  18 atataataaaattccattgtt-ggattgatgg----gatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttca 112  Q
    ||||||||||||||||||||| ||||||||||    |||||| |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||||    
T  49368512 atataataaaattccattgtttggattgatggaatggatgtacatggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttca 49368413  T
Q  113 atttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctc 212  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||||    
T  49368412 atttctcattctccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctc 49368317  T
Q  213 tacttgatcataattttcaacacgttcttctctct 247  Q
    ||||  |||| |||||||||||||||||| |||||    
T  49368316 tactcaatcacaattttcaacacgttcttttctct 49368282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 63 - 247
Target Start/End: Original strand, 20983273 - 20983453
Alignment:
Q  63 ggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtg 162  Q
    |||||||||  ||||| || ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||| |||||    
T  20983273 ggaatggaatgcaatgaaaccaattccattctataccactcaatccttcaatttcttattccccccaatttgggaggtatccaatgaaatgaaatttgtg 20983372  T
Q  163 tctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttctctct 247  Q
    |||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| |||||||||||||||||| |||||    
T  20983373 tcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctct 20983453  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 14567889 - 14567979
Alignment:
Q  63 ggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaata 153  Q
    ||||||||| |||||||||   ||||||||| ||| ||  ||| |||||||||| |||||||||||||||||||  |||| ||||||||||    
T  14567889 ggaatggaatacaatggaactcattccatccaataccatccaaaccttcaatttttcattccccccaatttggggtgtatccaatggaata 14567979  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 17575791 - 17575853
Alignment:
Q  65 aatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccc 127  Q
    ||||||||| ||||||||  ||||||||  |||||||||||||||||||||| ||||||||||    
T  17575791 aatggaacataatggaattcattccatctcatatcactcaatccttcaatttttcattccccc 17575853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 35231849 - 35231809
Alignment:
Q  113 atttctcattccccccaatttgggaggtatgcaatggaata 153  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  35231849 atttttcattccccccaatttgggaggtatgcaatggaata 35231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 42029356 - 42029280
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  42029356 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 42029280  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 40024898 - 40024845
Alignment:
Q  99 cactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  40024898 cactcattccttcaatttttcattcctcccaatttggggtgtatccaatggaat 40024845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 30190937 - 30190721
Alignment:
Q  18 atataataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaattt 116  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||          ||||||||| ||||| ||||||||||||||||||    
T  30190937 atataataaaattccattgtttggattgatgggatgtacatggaatggaatggaac----------caattccattctataccactcaatccttcaattt 30190848  T
Q  117 ctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||    
T  30190847 ctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctact 30190752  T
Q  217 tgatcataattttcaacacgttcttctctct 247  Q
      |||| |||||||||||||||||| |||||    
T  30190751 caatcacaattttcaacacgttcttttctct 30190721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 31991765 - 31991576
Alignment:
Q  23 ataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcat 121  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||    
T  31991765 ataaaattccattgtttggattgatgagatgtaaatggaatggaatggaacacaatggaatcaattccattctataccactcattccttcaattcctcat 31991666  T
Q  122 tccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 216  Q
    ||||||||||||||| ||||| |||||||||  |||||||||||| |||| ||||    |||||||||||||||||||||| |||||||||||||    
T  31991665 tccccccaatttggg-ggtatccaatggaatggaacttgtgtcttgaaatattac----tattctaccctcattttatttgtctcttcctctact 31991576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 19337655 - 19337736
Alignment:
Q  55 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 136  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  19337655 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 19337736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 35306793 - 35306754
Alignment:
Q  113 atttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  35306793 atttttcattccccccaatttgggaggtatgcaatggaat 35306754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 717 - 798
Alignment:
Q  55 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 136  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  717 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 56974 - 57050
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| ||||||||||| ||| |||||| |   ||| ||| ||||||||||||| ||||||||||| |||||||||    
T  56974 atggaaccaattccatccaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaat 57050  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 48084775 - 48084816
Alignment:
Q  111 caatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| ||||||||||||||||||||||||| | |||||||    
T  48084775 caatttttcattccccccaatttgggaggtatacgatggaat 48084816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 41809963 - 41809887
Alignment:
Q  76 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 152  Q
    |||||| | |||||||  |||| |||||| || | ||||||  ||||||||||||||||||| |||| |||||||||    
T  41809963 atggaacccattccatgatataccactcattcatccaattttccattccccccaatttgggatgtattcaatggaat 41809887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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