View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_high_7 (Length: 572)

Name: NF12891_high_7
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_high_7
NF12891_high_7
[»] chr7 (5 HSPs)
chr7 (232-469)||(19736912-19737149)
chr7 (231-469)||(23684201-23684439)
chr7 (228-272)||(11694793-11694837)
chr7 (521-551)||(19737201-19737231)
chr7 (521-551)||(23684119-23684149)
[»] chr5 (2 HSPs)
chr5 (237-412)||(14946716-14946894)
chr5 (232-272)||(4909680-4909720)
[»] chr4 (6 HSPs)
chr4 (230-412)||(31807806-31807991)
chr4 (1-77)||(56051972-56052050)
chr4 (289-358)||(5825391-5825460)
chr4 (231-272)||(30137130-30137171)
chr4 (232-272)||(25611670-25611710)
chr4 (232-272)||(30138256-30138296)
[»] chr3 (5 HSPs)
chr3 (232-382)||(49086080-49086230)
chr3 (291-345)||(46740500-46740554)
chr3 (231-272)||(4486632-4486673)
chr3 (289-357)||(8653640-8653711)
chr3 (232-272)||(15844632-15844672)
[»] chr8 (2 HSPs)
chr8 (289-358)||(788083-788152)
chr8 (231-272)||(26492030-26492071)
[»] scaffold0180 (1 HSPs)
scaffold0180 (291-345)||(22201-22255)
[»] scaffold0041 (1 HSPs)
scaffold0041 (290-357)||(27279-27349)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 232 - 469
Target Start/End: Original strand, 19736912 - 19737149
Alignment:
Q  232 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggatgaaatgagaaacacactcttatcatacactctc 331  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19736912 ggtggcatttaagatgcacaagtgtaaaacttgtgcaccataggaaagtttatttccaccattggatgaaatgaaaaacacactcttatcatacactctc 19737011  T
Q  332 accactagattttttacactatcttcttcggctattctctctcacccaccatcaacaacacccagcccttttccacactcttccataaatcatccgaatt 431  Q
    ||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19737012 accactaaattttttacactatcttcttcggccattccttctcacccaccatcaacaacacccagcccttttccacactcttccataaatcatccgaatt 19737111  T
Q  432 ttcagattgaaacatctgcattattcattgtctgatct 469  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19737112 ttcagattgaaacatctgcagtattcattgtctgatct 19737149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 231 - 469
Target Start/End: Complemental strand, 23684439 - 23684201
Alignment:
Q  231 tggtgacatttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggatgaaatgagaaacacactcttatcatacactct 330  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23684439 tggtgacatttaggatgcacaggtgtaaaacatgtgcaccataggaaagtttatttccaccattggatgagatgagaaacacactcttatcatacactct 23684340  T
Q  331 caccactagattttttacactatcttcttcggctattctctctcacccaccatcaacaacacccagcccttttccacactcttccataaatcatccgaat 430  Q
    |  || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23684339 cgacattagattttttacactatcttcttcggccattctctctcacccaccatcaacaacacctagcccttttccacactcttccataaatcatccgaat 23684240  T
Q  431 tttcagattgaaacatctgcattattcattgtctgatct 469  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  23684239 tttcagattgaaacatcctcattattcattgtctgatct 23684201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 11694793 - 11694837
Alignment:
Q  228 gagtggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 272  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||    
T  11694793 gagtggtggcatttagtatgcacaagtgttaaacttgtgcaccat 11694837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 521 - 551
Target Start/End: Original strand, 19737201 - 19737231
Alignment:
Q  521 cctaggcacttgacaacatgttagttattat 551  Q
    |||||||||||||||||||||||||||||||    
T  19737201 cctaggcacttgacaacatgttagttattat 19737231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 521 - 551
Target Start/End: Complemental strand, 23684149 - 23684119
Alignment:
Q  521 cctaggcacttgacaacatgttagttattat 551  Q
    |||||||||||||||||||||||||||||||    
T  23684149 cctaggcacttgacaacatgttagttattat 23684119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 237 - 412
Target Start/End: Original strand, 14946716 - 14946894
Alignment:
Q  237 catttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggatgaaatgagaaacacactcttatcatacactctcaccac 336  Q
    |||||||| |||||||  |||||||||||||||||| | ||| |||||||| ||||||||||||||| | ||||||||| |||||| |||||||||||||    
T  14946716 catttagggtgcacaaacgtaaaacttgtgcaccatggaaaagtttatttctaccattggatgaaataaaaaacacactattatcacacactctcaccac 14946815  T
Q  337 taga---ttttttacactatcttcttcggctattctctctcacccaccatcaacaacacccagcccttttccacactct 412  Q
    ||||   |||||||||||||||||| |  | |||||||||||||||||||||||||||||  |||||||||||||||||    
T  14946816 tagatctttttttacactatcttctccaaccattctctctcacccaccatcaacaacaccatgcccttttccacactct 14946894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 4909720 - 4909680
Alignment:
Q  232 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 272  Q
    |||| |||||||| ||||||||||| |||||||||||||||    
T  4909720 ggtggcatttagggtgcacaagtgttaaacttgtgcaccat 4909680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 8e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 230 - 412
Target Start/End: Complemental strand, 31807991 - 31807806
Alignment:
Q  230 gtggtgacatttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggatgaaatgagaaacacactcttatcatacactc 329  Q
    |||||| |||||||| |||||||| ||||||||| |||| ||| ||||| |||||||| |||||||||||| || | ||||||||| |||||||||||||    
T  31807991 gtggtggcatttagggtgcacaagcgtaaaacttttgcatcatgggaaaatttatttctaccattggatgagataaaaaacacactattatcatacactc 31807892  T
Q  330 tcaccactaga---ttttttacactatcttcttcggctattctctctcacccaccatcaacaacacccagcccttttccacactct 412  Q
    |||||||||||   |||||| ||||||||||| |  | ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31807891 tcaccactagatctttttttccactatcttctccaaccattctctctcacccaccatcaacaacaccaagccattttccacactct 31807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 56052050 - 56051972
Alignment:
Q  1 acaaaaagttagtggatcccatggatttttggtctctct--tgtatttcttcgctttgccaaacagtggaagttaccca 77  Q
    |||||||||| |||| ||| |||||||||||||||||||  |||||||||  | | |||||||||||||||||||||||    
T  56052050 acaaaaagttggtgggtcctatggatttttggtctctctcttgtatttctatgttatgccaaacagtggaagttaccca 56051972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 5825391 - 5825460
Alignment:
Q  289 accattggatgaaatgagaaacacactcttatcatacactctcaccactagattttttacactatcttct 358  Q
    |||||| ||| ||||||| |||||| | ||||| ||| |||||| |||||||||||||||||||||||||    
T  5825391 accattagatcaaatgaggaacacattattatcctactctctcaacactagattttttacactatcttct 5825460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 30137130 - 30137171
Alignment:
Q  231 tggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 272  Q
    ||||| ||||||| |||||||||||| |||||||||||||||    
T  30137130 tggtggcatttagaatgcacaagtgttaaacttgtgcaccat 30137171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 25611670 - 25611710
Alignment:
Q  232 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 272  Q
    |||| ||||||| |||||||||||||||| |||||||||||    
T  25611670 ggtggcatttagtatgcacaagtgtaaaatttgtgcaccat 25611710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 30138296 - 30138256
Alignment:
Q  232 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 272  Q
    |||| ||||||| |||||||||||| |||||||||||||||    
T  30138296 ggtggcatttagaatgcacaagtgttaaacttgtgcaccat 30138256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 49086230 - 49086080
Alignment:
Q  232 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccataggaaattttatttccaccattggatgaaatgagaaacacactcttatcatacactctc 331  Q
    |||| |||||||||||||||| ||||||| ||||||||||| ||||| |||||||| |||||||||| ||| || ||||||||| ||||||| |||| ||    
T  49086230 ggtggcatttaggatgcacaaatgtaaaatttgtgcaccatgggaaagtttatttctaccattggattaaaagaaaaacacactattatcatgcactttc 49086131  T
Q  332 accactagattttttacactatcttcttcggctattctctctcacccacca 382  Q
    ||||||| ||||||||||||||||||  |  | ||||||||||||||||||    
T  49086130 accactatattttttacactatcttccccaaccattctctctcacccacca 49086080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 46740554 - 46740500
Alignment:
Q  291 cattggatgaaatgagaaacacactcttatcatacactctcaccactagattttt 345  Q
    |||||||| |||||| ||||||||||||||||||| | |||| || |||||||||    
T  46740554 cattggattaaatgaaaaacacactcttatcatactccctcaacattagattttt 46740500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 4486673 - 4486632
Alignment:
Q  231 tggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 272  Q
    ||||| |||||||| ||||||||||| |||||||||||||||    
T  4486673 tggtggcatttagggtgcacaagtgttaaacttgtgcaccat 4486632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 8653711 - 8653640
Alignment:
Q  289 accattggatgaaatgagaaacacactcttatcatacactctcaccactag---attttttacactatcttc 357  Q
    |||||| ||| |||||||||||||||||||||||||  | |||| ||||||   ||||| ||||||||||||    
T  8653711 accatttgatcaaatgagaaacacactcttatcatattccctcaacactagatcattttctacactatcttc 8653640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 15844672 - 15844632
Alignment:
Q  232 ggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 272  Q
    |||| ||||||| |||||||||||||||| |||||||||||    
T  15844672 ggtggcatttagtatgcacaagtgtaaaatttgtgcaccat 15844632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 788083 - 788152
Alignment:
Q  289 accattggatgaaatgagaaacacactcttatcatacactctcaccactagattttttacactatcttct 358  Q
    |||||| ||| ||||||| |||||| | ||||| ||| |||||| ||||| |||||||||||||||||||    
T  788083 accattagatcaaatgaggaacacattattatcctaccctctcaacactaaattttttacactatcttct 788152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 26492030 - 26492071
Alignment:
Q  231 tggtgacatttaggatgcacaagtgtaaaacttgtgcaccat 272  Q
    ||||| |||||||| ||||||||||| |||||||||||||||    
T  26492030 tggtggcatttagggtgcacaagtgttaaacttgtgcaccat 26492071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 22201 - 22255
Alignment:
Q  291 cattggatgaaatgagaaacacactcttatcatacactctcaccactagattttt 345  Q
    |||||||| |||||| ||||||||||||||||||| | |||| || |||||||||    
T  22201 cattggattaaatgaaaaacacactcttatcatactccctcaacattagattttt 22255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 27279 - 27349
Alignment:
Q  290 ccattggatgaaatgagaaacacactcttatcatacactctcaccacta---gattttttacactatcttc 357  Q
    ||||| ||| ||||||| |||||| ||||||||||| |||||| |||||    ||||||||||||||||||    
T  27279 ccattagattaaatgaggaacacattcttatcatactctctcaacactaaattattttttacactatcttc 27349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University