View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_high_70 (Length: 250)

Name: NF12891_high_70
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_high_70
NF12891_high_70
[»] chr6 (8 HSPs)
chr6 (1-234)||(33710921-33711153)
chr6 (1-196)||(21198823-21199019)
chr6 (73-216)||(21313702-21313845)
chr6 (98-215)||(21173086-21173206)
chr6 (172-215)||(21166711-21166754)
chr6 (150-213)||(20998350-20998416)
chr6 (175-215)||(21218114-21218154)
chr6 (73-167)||(21108810-21108904)
[»] scaffold0060 (1 HSPs)
scaffold0060 (10-190)||(21709-21888)
[»] chr8 (1 HSPs)
chr8 (98-215)||(24943669-24943786)
[»] scaffold0016 (1 HSPs)
scaffold0016 (73-213)||(70767-70906)
[»] scaffold0272 (2 HSPs)
scaffold0272 (73-168)||(8717-8811)
scaffold0272 (152-212)||(3737-3797)
[»] chr5 (1 HSPs)
chr5 (73-129)||(13119797-13119853)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 33710921 - 33711153
Alignment:
Q  1 aacaatttcgaacattcaaacaacctctagctcaactttaaacaaggtacatattttgaagtatataagtaaatcatagcatttcttttagttaagatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33710921 aacaatttcgaacattcaaacaacctctagctcaactttaaacaagttatatattttgaagtatataagcaaatcatagcatttcttttagttaagatgg 33711020  T
Q  101 gactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataagaaag 200  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  33711021 gactatttttagtgctc-ttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaatcataaag 33711119  T
Q  201 catttatccattggatgtgctcctctacaacaac 234  Q
    ||||||||||||||||||||||||||||||||||    
T  33711120 catttatccattggatgtgctcctctacaacaac 33711153  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 21198823 - 21199019
Alignment:
Q  1 aacaatttcgaacattcaaacaacctctagctcaactttaaacaaggtacatattttgaagtatataagtaa-atcatagcatttcttttagttaagatg 99  Q
    ||||||||| ||||||||||  | |||  |||||||||| |||||||| ||||  |||||||||||||| || |||||||||||| |||||||  || ||    
T  21198823 aacaatttcaaacattcaaatcaactcaggctcaacttttaacaaggtgcataccttgaagtatataagcaatatcatagcattttttttagtcgaggtg 21198922  T
Q  100 ggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataag 196  Q
     |||||||||||||||||  ||||| |||| ||||  ||| ||| ||||||||||||||||||| |||| | ||||||||||||||||||| |||||    
T  21198923 agactatttttagtgcccaatttcttgcttttttaagtttcagttgagatgaaacataaaagaaaaattcattaacaactcataatcttactataag 21199019  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 21313702 - 21313845
Alignment:
Q  73 atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagt 172  Q
    |||||||||||| |||  ||  || ||||||||| |||||| ||| |||||| |||||||||| ||| ||||||| |||||||||||||||||||| |||    
T  21313702 atcatagcatttgtttctgtccaggtgggactatatttagttccctttttcttgcttctttatgtttcagtcgagttgaaacataaaagaagaattcagt 21313801  T
Q  173 aacaactcataatcttacaataagaaagcatttatccattggat 216  Q
    ||| | ||||||| || | ||||| || | |||||| |||||||    
T  21313802 aacgattcataattttcctataagcaaacgtttatcaattggat 21313845  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 21173086 - 21173206
Alignment:
Q  98 tgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataaga 197  Q
    ||||| ||| ||||||| ||||||||| |||||||||  ||| | |||||||| ||||||||||||||||| |  |||||||||||||| ||| |||||     
T  21173086 tgggattatatttagtgtcccttttcttgcttctttaattttcaatcgagatggaacataaaagaagaattcaacaacaactcataatcataccataagc 21173185  T
Q  198 aagc---atttatccattgga 215  Q
    ||||   ||||||||||||||    
T  21173186 aagcataatttatccattgga 21173206  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 21166711 - 21166754
Alignment:
Q  172 taacaactcataatcttacaataagaaagcatttatccattgga 215  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  21166711 taacagctcataatcttacaataagaaagcatttacccattgga 21166754  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 20998416 - 20998350
Alignment:
Q  150 gaaacataaaagaagaatttagtaacaac---tcataatcttacaataagaaagcatttatccattg 213  Q
    ||||| |||||||||||||||| ||||||   |||||||||||| ||||| |||||| |||||||||    
T  20998416 gaaacttaaaagaagaatttagcaacaacaactcataatcttactataagcaagcatctatccattg 20998350  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 21218114 - 21218154
Alignment:
Q  175 caactcataatcttacaataagaaagcatttatccattgga 215  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  21218114 caactcataatcttactataagtaagcatttatccattgga 21218154  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 21108810 - 21108904
Alignment:
Q  73 atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaat 167  Q
    |||||||| ||||||| | |  || ||||||||||||  |||||||||||||   |||||||| ||| |||| ||||||||| ||||| ||||||    
T  21108810 atcatagcctttctttcattagaggtgggactattttctgtgccccttttcttttttctttatgtttcagtcaagatgaaacgtaaaacaagaat 21108904  T

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Target: scaffold0060 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 21888 - 21709
Alignment:
Q  10 gaacattcaaacaacctctagctcaactttaaacaaggtacatattttgaagtatataagtaaatcatagcatttcttttagttaagatgggactatttt 109  Q
    |||||||||||||||| |   | |||||||||| | ||||||||||||||||||||| || |||||||| |||||||||||||| || ||||||||| ||    
T  21888 gaacattcaaacaaccccacacccaactttaaatatggtacatattttgaagtatatgagcaaatcata-catttcttttagttgaggtgggactatatt 21790  T
Q  110 tagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttac 190  Q
    ||||||||||||| | |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21789 tagtgccccttttattgcttctttaagtttaagtcgagatgaaacataaaagaacaatttagtaacaactcataatcttac 21709  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 24943669 - 24943786
Alignment:
Q  98 tgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataaga 197  Q
    ||||||||||||||||| ||||||||| |||||||||  ||| |||||||||| ||||||||||||||||| || |||||||||||||| ||| |||||     
T  24943669 tgggactatttttagtgtcccttttcttgcttctttaagtttcagtcgagatggaacataaaagaagaattcagcaacaactcataatcataccataagc 24943768  T
Q  198 aagcatttatccattgga 215  Q
    ||||||||||||||||||    
T  24943769 aagcatttatccattgga 24943786  T

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Target: scaffold0016 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 213
Target Start/End: Complemental strand, 70906 - 70767
Alignment:
Q  73 atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagt 172  Q
    |||||||||||| |||  ||  || ||| ||||||||||||||  ||||||| |||| ||||  ||||||| |||||| ||||||||||||||| | |      
T  70906 atcatagcatttttttcggtcgaggtggaactatttttagtgcatcttttcttgctt-tttaagtttaagttgagatggaacataaaagaagaactcatc 70808  T
Q  173 aacaactcataatcttacaataagaaagcatttatccattg 213  Q
    |||||||||||||||||| | ||| ||||||||||||||||    
T  70807 aacaactcataatcttactacaagcaagcatttatccattg 70767  T

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Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 8811 - 8717
Alignment:
Q  73 atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatt 168  Q
    ||||||||||||||||  ||  || |||||||||||||||||| | |||||  | || ||||  ||| ||||||||||||||||||||||||||||    
T  8811 atcatagcatttctttcggtcgaggtgggactatttttagtgctcattttcatgttt-tttaagttttagtcgagatgaaacataaaagaagaatt 8717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 3797 - 3737
Alignment:
Q  152 aacataaaagaagaatttagtaacaactcataatcttacaataagaaagcatttatccatt 212  Q
    ||||||||||||||||| || ||||||||| |||||||| ||||| ||| |||||| ||||    
T  3797 aacataaaagaagaattcagcaacaactcaaaatcttactataagcaagtatttattcatt 3737  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 13119797 - 13119853
Alignment:
Q  73 atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgctt 129  Q
    ||||||||||||||||| ||  || ||| || |||||||||||||||||||| ||||    
T  13119797 atcatagcatttcttttggtcgaggtggaacaatttttagtgccccttttcttgctt 13119853  T

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