View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_8 (Length: 568)
Name: NF12891_high_8
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 27668776 - 27668384
Alignment:
| Q |
13 |
gagaagaagccatcacaattggaggttggattaggtgagaaggttgaaaggtaaaagaggctttggtgaataacaa----ccaaacaacaccaacaaagt |
108 |
Q |
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| T |
27668776 |
gagaagaagccatcacaattggaggttggattaggtgagaaggttgaaaggtaaaagaggctttggtgaataacaaacaaccaaacaacaccaacaaagt |
27668677 |
T |
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| Q |
109 |
tatagcatcaatcagttttgttttgactattgctttgacataggttgttgtagagctcgcggctttagttttatgaattttgtgtagattgtcctactct |
208 |
Q |
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| T |
27668676 |
tatagcatcaatcagttttgttttgactattgctttgacataggttgttgtagagctcgcggctttagttttatgaattttgtgtagattgtcctactct |
27668577 |
T |
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| Q |
209 |
gacaaactctttcagcaacaaataagtatgaagcatagattgagatgagggatttggaataagtttctggctggtgctgctgttatgttgctgaaactca |
308 |
Q |
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| T |
27668576 |
gacaaactctttcagcaacaaataagtatgaagagtagattgagatgggggatttggaataagtttctggctggtgctgctgttatgttgctgaaactca |
27668477 |
T |
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| Q |
309 |
caacctggaacaataacgtgccaaattagtataaccatgtattggattttggtctccaactaccttcccaaatgaaaacatttcggctattat |
401 |
Q |
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| T |
27668476 |
caacctggaacaataacgtgccaaattagtataaccatgtattggattttggtctccaactaccttcccaaatgaaaacatttcggctattat |
27668384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 449 - 551
Target Start/End: Complemental strand, 27668336 - 27668234
Alignment:
| Q |
449 |
tagaccaattatcaatgtaaaagtgtcacaaatctttgtggagttttggttatataaaatgaggttaatgatattaaattctgtaacatcagttatttgt |
548 |
Q |
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| T |
27668336 |
tagaccaattatcattgtaaaagtgtcacaaatctttgtggagttttggttatataaactgaggttaatgacattaaattctgtaacatcagttatttgt |
27668237 |
T |
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| Q |
549 |
agt |
551 |
Q |
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||| |
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| T |
27668236 |
agt |
27668234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 27653526 - 27653431
Alignment:
| Q |
17 |
agaagccatcacaattggaggttggattaggtgagaaggttgaaaggtaa----aagaggctttggtgaataacaaccaaacaacaccaacaaagt |
108 |
Q |
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| T |
27653526 |
agaagccatcacaattggaggatggattagttgagaaggttgaaagggaaagggaggaggctttggagaataacaaccaaacaacaccaacaaagt |
27653431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 27653280 - 27653214
Alignment:
| Q |
292 |
tatgttgctgaaactcacaacctggaacaataacgtgccaaattagtataaccatgtattggattttgg |
360 |
Q |
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| T |
27653280 |
tatgttgctgaaaat-acaacctg-aacaataaggtgacaaattagtatggccatgtattggattttgg |
27653214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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