View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_83 (Length: 239)
Name: NF12891_high_83
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_83 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36299190 - 36299413
Alignment:
| Q |
1 |
aaaaataagttgaaaacagcttatacacatgtcatatgctattttttataaattttatcaaacatagtagaataggtttaaaatgattaagaactgcgcg |
100 |
Q |
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| T |
36299190 |
aaaaataagttgaaaacagcttatacacatgtcatatgctattttttataaattttatcaaacatagtagaataggtttaaaatgattaagaactgcgcg |
36299289 |
T |
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| Q |
101 |
aagtagaagaaaccgtgaatgtctgttagtattctttttcagcatgaaacttttttggttatttaatttctgtgcttaaaataattcttattggttccga |
200 |
Q |
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| T |
36299290 |
aagtagaagaaaccgtgaatgtctgttagtattctttttcagcatgaaacttttttggttatttaatttctgtgcttaaaataattcttattggttccga |
36299389 |
T |
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| Q |
201 |
attctgaataaagatgaatatggt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
36299390 |
attctgaataaagatgaatatggt |
36299413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 48300465 - 48300323
Alignment:
| Q |
81 |
aaatgattaagaactgcgcgaagtagaagaaaccgtgaatgtctgttag--tattctttttcagcatgaaacttttttggttatttaatttctgtgctta |
178 |
Q |
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| T |
48300465 |
aaatgatcaagaactgcacgaattagaagaaaccatgagtgtctattagtatattctttttcagcatgaaa-ttttttggttatttaatttctctttttt |
48300367 |
T |
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| Q |
179 |
aaataattcttattggttccgaattctgaataaagatgaatatggt |
224 |
Q |
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| T |
48300366 |
aaataa--gttattggttctgacttctgaataaacatgaatatggt |
48300323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 48300515 - 48300462
Alignment:
| Q |
1 |
aaaaataagttgaaaacagcttatacacatgtcatatgctattt-tttataaat |
53 |
Q |
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| T |
48300515 |
aaaaataagttgaaaatagcttatacacatgtcataagctgtttatttataaat |
48300462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 98671 - 98629
Alignment:
| Q |
3 |
aaataagttgaaaacagcttatacacatgtcatatgctatttt |
45 |
Q |
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| T |
98671 |
aaataagttgaaaacagcttatgaacatgtcataagctatttt |
98629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 42597477 - 42597519
Alignment:
| Q |
3 |
aaataagttgaaaacagcttatacacatgtcatatgctatttt |
45 |
Q |
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| T |
42597477 |
aaataagttgaaaacagcttatagacatgtcataagcaatttt |
42597519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 12361231 - 12361272
Alignment:
| Q |
3 |
aaataagttgaaaacagcttatacacatgtcatatgctattt |
44 |
Q |
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| T |
12361231 |
aaataagttgaaaacagcttatggacatgtcataagctattt |
12361272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 25705691 - 25705659
Alignment:
| Q |
2 |
aaaataagttgaaaacagcttatacacatgtca |
34 |
Q |
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| T |
25705691 |
aaaataagttgaaaacagcttatagacatgtca |
25705659 |
T |
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