View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_89 (Length: 233)
Name: NF12891_high_89
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_89 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 36050842 - 36051062
Alignment:
| Q |
2 |
gaatcaatattttatttattcatgtccaagacaaatcttatcatactataataaagagactagtgttaataagattttttacattagttaaaatgaaaaa |
101 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
36050842 |
gaatcaataatttatttatccatgtccaagacaaatcttatcatactataataaagagaccagtgttaataagattttttaca----ttaaaatgaaaaa |
36050937 |
T |
|
| Q |
102 |
agtaacatacaatacaagtattagtctctc------nnnnnnnnngtattagtctatcaaagaatatattcatgtcccaaacaaaacgagagtagtgtta |
195 |
Q |
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|||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36050938 |
agtaacctacaatacaagttttagtctctctcaaaaaaaaaaaaagtattagtctatcaaagaatatattcatgtcccaaacaaaacgagactagtgtta |
36051037 |
T |
|
| Q |
196 |
atatcacttgttttagcattctcct |
220 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
36051038 |
ataacacttgttttagcattctcct |
36051062 |
T |
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