View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12891_high_96 (Length: 214)

Name: NF12891_high_96
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12891_high_96
NF12891_high_96
[»] chr3 (14 HSPs)
chr3 (1-209)||(40160565-40160772)
chr3 (1-45)||(16874248-16874292)
chr3 (1-39)||(30745789-30745827)
chr3 (11-47)||(9684990-9685026)
chr3 (1-44)||(19137613-19137656)
chr3 (1-44)||(51412048-51412091)
chr3 (1-39)||(3973301-3973339)
chr3 (1-39)||(3996537-3996575)
chr3 (1-43)||(12143465-12143507)
chr3 (1-39)||(38507647-38507685)
chr3 (1-38)||(4010076-4010113)
chr3 (1-45)||(24130552-24130596)
chr3 (1-45)||(24160586-24160630)
chr3 (1-37)||(51017791-51017827)
[»] chr7 (12 HSPs)
chr7 (1-39)||(8147244-8147282)
chr7 (1-45)||(7392364-7392408)
chr7 (1-48)||(17305448-17305495)
chr7 (1-38)||(41012639-41012676)
chr7 (8-39)||(10958038-10958069)
chr7 (1-39)||(3246544-3246582)
chr7 (1-39)||(11808037-11808075)
chr7 (1-45)||(29658330-29658375)
chr7 (1-44)||(21285411-21285455)
chr7 (1-45)||(35195836-35195880)
chr7 (1-37)||(38328624-38328660)
chr7 (1-45)||(38363152-38363196)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-45)||(34091-34135)
[»] chr6 (12 HSPs)
chr6 (1-45)||(34524868-34524912)
chr6 (1-45)||(3448344-3448389)
chr6 (1-37)||(8309165-8309201)
chr6 (1-44)||(9031760-9031803)
chr6 (1-39)||(9051349-9051387)
chr6 (1-39)||(9422832-9422870)
chr6 (1-45)||(2945588-2945633)
chr6 (1-46)||(17176141-17176186)
chr6 (1-45)||(6219347-6219391)
chr6 (1-45)||(7374108-7374152)
chr6 (1-45)||(22730760-22730804)
chr6 (1-37)||(30833018-30833054)
[»] chr4 (12 HSPs)
chr4 (1-45)||(49039503-49039547)
chr4 (1-38)||(20610739-20610776)
chr4 (1-38)||(36045830-36045867)
chr4 (1-45)||(38657533-38657577)
chr4 (1-45)||(41492556-41492600)
chr4 (1-44)||(20166310-20166353)
chr4 (1-51)||(48512185-48512236)
chr4 (1-44)||(49319387-49319430)
chr4 (7-45)||(54854243-54854281)
chr4 (1-38)||(56918-56955)
chr4 (1-44)||(36008268-36008312)
chr4 (11-39)||(43323784-43323812)
[»] chr1 (16 HSPs)
chr1 (1-45)||(9768867-9768911)
chr1 (1-45)||(18003809-18003853)
chr1 (1-39)||(49632292-49632330)
chr1 (1-45)||(18179321-18179365)
chr1 (1-40)||(5862126-5862165)
chr1 (1-44)||(42908765-42908808)
chr1 (1-44)||(52961140-52961183)
chr1 (1-39)||(7015745-7015783)
chr1 (2-36)||(24119350-24119384)
chr1 (12-54)||(25819168-25819210)
chr1 (1-45)||(7906384-7906428)
chr1 (1-41)||(9004343-9004383)
chr1 (1-44)||(9527419-9527463)
chr1 (1-37)||(9769638-9769674)
chr1 (1-45)||(43327003-43327047)
chr1 (1-37)||(47645854-47645890)
[»] scaffold0712 (1 HSPs)
scaffold0712 (1-39)||(4519-4557)
[»] scaffold0709 (1 HSPs)
scaffold0709 (1-39)||(4539-4577)
[»] chr5 (8 HSPs)
chr5 (1-39)||(11246552-11246590)
chr5 (1-37)||(38040267-38040303)
chr5 (1-44)||(3535994-3536037)
chr5 (1-44)||(25660906-25660949)
chr5 (1-39)||(35813300-35813338)
chr5 (1-45)||(14077314-14077358)
chr5 (1-45)||(28537128-28537172)
chr5 (1-45)||(40250235-40250279)
[»] chr8 (15 HSPs)
chr8 (1-45)||(39432386-39432430)
chr8 (1-44)||(41793031-41793073)
chr8 (1-39)||(216205-216243)
chr8 (1-39)||(220420-220458)
chr8 (1-39)||(689575-689613)
chr8 (1-39)||(692765-692803)
chr8 (1-39)||(696974-697012)
chr8 (1-39)||(729828-729866)
chr8 (1-39)||(734043-734081)
chr8 (1-39)||(853723-853761)
chr8 (1-39)||(857939-857977)
chr8 (1-38)||(14011096-14011133)
chr8 (1-38)||(26657856-26657893)
chr8 (1-45)||(29937203-29937247)
chr8 (1-45)||(32940372-32940416)
[»] chr2 (9 HSPs)
chr2 (1-45)||(22355076-22355120)
chr2 (1-44)||(29664596-29664640)
chr2 (1-48)||(8080728-8080775)
chr2 (1-44)||(36277760-36277803)
chr2 (1-47)||(5772851-5772897)
chr2 (1-38)||(13294442-13294479)
chr2 (1-38)||(25071210-25071247)
chr2 (5-45)||(1244562-1244602)
chr2 (1-45)||(30736968-30737012)
[»] scaffold0118 (1 HSPs)
scaffold0118 (3-39)||(37388-37424)
[»] scaffold0112 (1 HSPs)
scaffold0112 (1-44)||(17989-18033)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 40160772 - 40160565
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggacagtttttattctagtttgattattacatactttgtttttctcatatcagcaagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40160772 ataacaatgcatgtccctgccaattgagctatgctcacgaggacagtttttattctagtttgattattacatactttgtttttctcatatcagcaag-aa 40160674  T
Q  101 aattaaaatgtatgcacaaatatgaaatatcatgatcaatacaaaggaaaattctaaagctaaagcaatacattgtatagnnnnnnnncctactgttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  40160673 aattaaaatgtatgcacaaatatgaaatatcatgatcaatacaaaggaaaattataaagctaaagcaatacattgtatagttttttttcctactgttctt 40160574  T
Q  201 gtctgtgct 209  Q
    |||||||||    
T  40160573 gtctgtgct 40160565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16874248 - 16874292
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  16874248 ataacaatgcatgtccctgccaactgagctatgctcacggggaca 16874292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30745789 - 30745827
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  30745789 ataacaatgcatgtccctgccaactgagctatgctcacg 30745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 9685026 - 9684990
Alignment:
Q  11 atgtccctgccaattgagctatgctcacgaggacagt 47  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9685026 atgtccctgccaattgagctatgctcacggggacagt 9684990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19137656 - 19137613
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||    
T  19137656 ataacaatgcatgttcctgccaactgagctatgctcacggggac 19137613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 51412048 - 51412091
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||    
T  51412048 ataacaatgcatgtccctgccaactgaactatgcttacgaggac 51412091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3973339 - 3973301
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  3973339 ataacaatgcatgtccctaccaactgagctatgctcacg 3973301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3996537 - 3996575
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  3996537 ataacaatgcatgtccctaccaactgagctatgctcacg 3996575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12143465 - 12143507
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgagga 43  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||    
T  12143465 ataacaatgcatgtccctgccaactgagctatgttcacaagga 12143507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38507685 - 38507647
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  38507685 ataataatgcatgtccctgccaactgagctatgctcacg 38507647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4010076 - 4010113
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcac 38  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  4010076 ataacaatgcatgtccctaccaactgagctatgctcac 4010113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24130596 - 24130552
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||| ||||||||||||| |||| |||||||||| |||||    
T  24130596 ataacaatgtatgtccctgccaactgagttatgctcacggggaca 24130552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24160586 - 24160630
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||| |||||||| ||||||| |||| ||||||||||||||||    
T  24160586 ataacagtgcatgtctctgccaactgagttatgctcacgaggaca 24160630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51017827 - 51017791
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctca 37  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  51017827 ataacaatgcatgtccctgccaactgagctatactca 51017791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8147244 - 8147282
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8147244 ataacaatgcatgtccctgccaattgagctatgctcacg 8147282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7392364 - 7392408
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  7392364 ataacaatgcatgttcctgccaattgagctatgctcacggggaca 7392408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17305448 - 17305495
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggacagtt 48  Q
    ||||||||||||||||||||||| |||||||||||||||  |||||||    
T  17305448 ataacaatgcatgtccctgccaactgagctatgctcacggagacagtt 17305495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41012639 - 41012676
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcac 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  41012639 ataacaatgcatgtccctaccaattgagctatgctcac 41012676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 10958069 - 10958038
Alignment:
Q  8 tgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||||||||||||||||||    
T  10958069 tgcatgtccctgccaattgagctatgctcacg 10958038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3246544 - 3246582
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  3246544 ataacaatgcatgtccctgtcaactgagctatgctcacg 3246582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11808075 - 11808037
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  11808075 ataacaatgcatgtccctaccaattgagctaagctcacg 11808037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29658330 - 29658375
Alignment:
Q  1 ataacaatgcat-gtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||||    
T  29658330 ataacaatgcattgtcgctgccaattgagctatgctcacggggaca 29658375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21285411 - 21285455
Alignment:
Q  1 ataacaatgcat-gtccctgccaattgagctatgctcacgaggac 44  Q
    |||||||||||| ||||||||||| ||||||||||||||| ||||    
T  21285411 ataacaatgcattgtccctgccaactgagctatgctcacggggac 21285455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35195880 - 35195836
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||| |||||||||||||||||| ||||||||||| ||| |||||    
T  35195880 ataataatgcatgtccctgccaactgagctatgcttacggggaca 35195836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38328624 - 38328660
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctca 37  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  38328624 ataacaatgtatgtccctaccaattgagctatgctca 38328660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38363196 - 38363152
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||| |||| |||||||||||| ||||||||||| |||||    
T  38363196 ataacaatgtatgttcctgccaattgaactatgctcacggggaca 38363152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34091 - 34135
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  34091 ataacaatgcatgtccctgccaactgagctatgctcacggggaca 34135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34524912 - 34524868
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  34524912 ataacaatgcatgtccctgccaactgagctatgctcacggggaca 34524868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3448389 - 3448344
Alignment:
Q  1 ataacaatgcat-gtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||    
T  3448389 ataacaatgcattgtccctgccaattgagctatgctcacggggaca 3448344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8309201 - 8309165
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctca 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8309201 ataacaatgcatgtccctgccaactgagctatgctca 8309165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9031803 - 9031760
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||    
T  9031803 ataacaatgcatgtccctgccaactgagctatgttcacggggac 9031760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9051349 - 9051387
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  9051349 ataacaatgcatatccttgccaattgagctatgctcacg 9051387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9422870 - 9422832
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  9422870 ataacaatgcatgtccctgccaactgagttatgctcacg 9422832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2945633 - 2945588
Alignment:
Q  1 ataacaatgcat-gtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||    
T  2945633 ataacaatgcattgtccctgccaactgagctatgctcacggggaca 2945588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17176186 - 17176141
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggacag 46  Q
    ||||||||||||||||||| ||| ||||||||| | ||||||||||    
T  17176186 ataacaatgcatgtccctgtcaactgagctatgtttacgaggacag 17176141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6219391 - 6219347
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||| |||||||||||||||||| ||||||||| ||||| |||||    
T  6219391 ataataatgcatgtccctgccaactgagctatgttcacggggaca 6219347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7374108 - 7374152
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||    
T  7374108 ataacaatgcatgtccctgccaatcgagatatgttcacgatgaca 7374152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22730760 - 22730804
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||| ||||||| |||| |||||||||| |||||    
T  22730760 ataacaatgcatgtctctgccaactgagttatgctcacggggaca 22730804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30833054 - 30833018
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctca 37  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  30833054 ataacaatgcatgtccctgccaactgaactatgctca 30833018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49039503 - 49039547
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  49039503 ataacaatgcatgtccctgccaactgagctatgctcacggggaca 49039547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20610776 - 20610739
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcac 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20610776 ataacaatgcatgtccctgccaactgagctatgctcac 20610739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36045867 - 36045830
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcac 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  36045867 ataacaatgcatgtccctgtcaattgagctatgctcac 36045830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38657577 - 38657533
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||    
T  38657577 ataacaatgcatgtccctgccaactgagccatgctcacggggaca 38657533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41492556 - 41492600
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||    
T  41492556 ataataatgcatgtccctgccaactgagctatgctcacggggaca 41492600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20166353 - 20166310
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||    
T  20166353 ataacaatgcatgtccctgccaactgagctacgctcacggggac 20166310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48512236 - 48512185
Alignment:
Q  1 ataacaatgcat-gtccctgccaattgagctatgctcacgaggacagttttt 51  Q
    |||||||||||| ||||||||||| ||||||||||||||| ||||| |||||    
T  48512236 ataacaatgcattgtccctgccaactgagctatgctcacggggacaattttt 48512185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 49319430 - 49319387
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||    
T  49319430 ataataatgcatgtccatgccaactgagctatgctcacgaggac 49319387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 54854243 - 54854281
Alignment:
Q  7 atgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  54854243 atgcatgtccctgccaactgagctatgctcacggggaca 54854281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 56918 - 56955
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcac 38  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  56918 ataacaatgcatgtccctgccaactgagttatgctcac 56955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36008312 - 36008268
Alignment:
Q  1 ataacaatgcat-gtccctgccaattgagctatgctcacgaggac 44  Q
    |||||||||||| ||||||||||| ||||||||||||||| ||||    
T  36008312 ataacaatgcattgtccctgccaactgagctatgctcacggggac 36008268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 43323784 - 43323812
Alignment:
Q  11 atgtccctgccaattgagctatgctcacg 39  Q
    |||||||||||||||||||||||||||||    
T  43323784 atgtccctgccaattgagctatgctcacg 43323812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9768867 - 9768911
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  9768867 ataacaatgcatgtccctgccaactgagctatgctcacggggaca 9768911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18003853 - 18003809
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  18003853 ataacaatgcatgtccctgccaactgagctatgctcacggggaca 18003809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 49632330 - 49632292
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  49632330 ataacaatgcatgtccctgccaattgagctacgctcacg 49632292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18179365 - 18179321
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||    
T  18179365 ataacaatgcatgtccctgccaactgagttatgctcacggggaca 18179321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5862165 - 5862126
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacga 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  5862165 ataacaatgcatgtccctgccaactgagctatgttcacga 5862126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42908808 - 42908765
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||    
T  42908808 ataacaatgcatgtccctgccaactgagctaagctcacggggac 42908765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52961140 - 52961183
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||    
T  52961140 ataacaatgcatgtccttgccaactgagctatgctcacggggac 52961183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7015745 - 7015783
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  7015745 ataacaatgcatgtcccagccaactgagctatgctcacg 7015783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 24119384 - 24119350
Alignment:
Q  2 taacaatgcatgtccctgccaattgagctatgctc 36  Q
    |||||||||||||||||| ||||||||||||||||    
T  24119384 taacaatgcatgtccctgtcaattgagctatgctc 24119350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 25819210 - 25819168
Alignment:
Q  12 tgtccctgccaattgagctatgctcacgaggacagtttttatt 54  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||    
T  25819210 tgtccctgccaactgagctatgctcacggggacactttttatt 25819168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7906384 - 7906428
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||||||||||||| |||| ||| ||||||||||| |||||    
T  7906384 ataacaatgcatgtccctaccaactgaactatgctcacggggaca 7906428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9004383 - 9004343
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgag 41  Q
    ||||||||  ||||||||||||| |||||||||||||||||    
T  9004383 ataacaatatatgtccctgccaactgagctatgctcacgag 9004343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9527463 - 9527419
Alignment:
Q  1 ataacaatgcat-gtccctgccaattgagctatgctcacgaggac 44  Q
    |||||||||||| ||||||||||| ||||||||||||||| ||||    
T  9527463 ataacaatgcattgtccctgccaactgagctatgctcacggggac 9527419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9769638 - 9769674
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctca 37  Q
    |||| |||||||||||||||||| |||||||||||||    
T  9769638 ataataatgcatgtccctgccaactgagctatgctca 9769674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43327047 - 43327003
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||| ||||||||||| || |||| ||||||||||||||||    
T  43327047 ataacaatacatgtccctgcaaactgagttatgctcacgaggaca 43327003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47645854 - 47645890
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctca 37  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  47645854 ataacaatgcatgtctctgccaactgagctatgctca 47645890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4557 - 4519
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  4557 ataacaatgcatgtccctgccaactgagctatgctcacg 4519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4577 - 4539
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  4577 ataacaatgcatgtccctgccaactgagctatgctcacg 4539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11246552 - 11246590
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  11246552 ataacaatgcatgtccctgccaactgagctatgctcacg 11246590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38040303 - 38040267
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctca 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38040303 ataacaatgcatgtccctgccaactgagctatgctca 38040267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3535994 - 3536037
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||    
T  3535994 ataacaatgcatgtccctgccaactgaactatgctcacggggac 3536037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25660949 - 25660906
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||    
T  25660949 ataacaatgcatatccctgccaactgagctatgctcacggggac 25660906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35813300 - 35813338
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  35813300 ataacaatgcatgtccctgtcaactgagctatgctcacg 35813338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14077314 - 14077358
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||||||| |||||| ||| ||| |||||||||||||||||    
T  14077314 ataacaatgcatatccctgtcaactgatctatgctcacgaggaca 14077358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28537172 - 28537128
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||||||||||| || |||||||| |||||||||| |||||    
T  28537172 ataacaatgcatgtccatgtcaattgagttatgctcacggggaca 28537128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40250235 - 40250279
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||  ||||||| ||||||||||||||| |||||    
T  40250235 ataacaatgcatgttactgccaactgagctatgctcacggggaca 40250279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39432386 - 39432430
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||    
T  39432386 ataacattgcatgtccctgccaactgagctatgctcacggggaca 39432430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41793031 - 41793073
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    |||||||||||||||| |||||||||||||||||||||| ||||    
T  41793031 ataacaatgcatgtcc-tgccaattgagctatgctcacggggac 41793073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 216205 - 216243
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  216205 ataacaatgtatgtccctgccaactgagctatgctcacg 216243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 220420 - 220458
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  220420 ataacattgcatgtccctgccaactgagctatgctcacg 220458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 689575 - 689613
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  689575 ataacattgcatgtccctgccaactgagctatgctcacg 689613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 692765 - 692803
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  692765 ataacaatgtatgtccctgccaactgagctatgctcacg 692803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 696974 - 697012
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  696974 ataacaatgtatgtccctgccaactgagctatgctcacg 697012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 729828 - 729866
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  729828 ataacaatgtatgtccctgccaactgagctatgctcacg 729866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 734043 - 734081
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  734043 ataacattgcatgtccctgccaactgagctatgctcacg 734081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 853723 - 853761
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  853723 ataacaatgtatgtccctgccaactgagctatgctcacg 853761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 857939 - 857977
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  857939 ataacattgcatgtccctgccaactgagctatgctcacg 857977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14011096 - 14011133
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcac 38  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  14011096 ataacaatgcatgtccctgccaactgaactatgctcac 14011133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26657893 - 26657856
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcac 38  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  26657893 ataacaatgcatgtccctaccaactgagctatgctcac 26657856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29937247 - 29937203
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||| ||||||||| |||| ||||||||||||||| |||||    
T  29937247 ataacaatacatgtccctaccaactgagctatgctcacggggaca 29937203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32940372 - 32940416
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||||||||||||||||| ||| |||||||| |||||| |||||    
T  32940372 ataacaatgcatgtccctgtcaactgagctatactcacggggaca 32940416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22355120 - 22355076
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||||||||||||||| |||||| ||||||||||||||| |||||    
T  22355120 ataacaatgcatgtccttgccaactgagctatgctcacggggaca 22355076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29664640 - 29664596
Alignment:
Q  1 ataacaatgcat-gtccctgccaattgagctatgctcacgaggac 44  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  29664640 ataacaatgcattgtccctgccaattgagctatgctcacggggac 29664596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8080728 - 8080775
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggacagtt 48  Q
    |||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  8080728 ataataatgcatgtccctaccaattgagctatgctcacgcgaacagtt 8080775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36277760 - 36277803
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggac 44  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||||    
T  36277760 ataacaatgcatgtcactgccaactgagctatgctcacggggac 36277803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5772897 - 5772851
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggacagt 47  Q
    |||||||| ||||||| |||||| ||||||||||||||| |||||||    
T  5772897 ataacaatacatgtccttgccaactgagctatgctcacggggacagt 5772851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13294442 - 13294479
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcac 38  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  13294442 ataacaatgcatgtccctgccaattgaactatgttcac 13294479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25071247 - 25071210
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcac 38  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  25071247 ataataatgcatgtccctgccaattgagctatactcac 25071210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 1244602 - 1244562
Alignment:
Q  5 caatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    ||||| ||||||||||||| ||| |||||||||||||||||    
T  1244602 caatgtatgtccctgccaactgaactatgctcacgaggaca 1244562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30737012 - 30736968
Alignment:
Q  1 ataacaatgcatgtccctgccaattgagctatgctcacgaggaca 45  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||    
T  30737012 ataataattcatatccctgccaattgagctatgctcacggggaca 30736968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 37388 - 37424
Alignment:
Q  3 aacaatgcatgtccctgccaattgagctatgctcacg 39  Q
    |||||||||||||||| |||| |||||||||||||||    
T  37388 aacaatgcatgtccctaccaactgagctatgctcacg 37424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17989 - 18033
Alignment:
Q  1 ataacaatgcat-gtccctgccaattgagctatgctcacgaggac 44  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||    
T  17989 ataacaatgcattgtccctaccaattgagctatgctcacggggac 18033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University