View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_high_97 (Length: 208)
Name: NF12891_high_97
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_high_97 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 37320988 - 37320781
Alignment:
| Q |
1 |
ttctttgttcattcacatcaaccagtgcaaaattctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccac |
100 |
Q |
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| T |
37320988 |
ttcttagttcattcacatcaaccatggcaaaattctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccac |
37320889 |
T |
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| Q |
101 |
tgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcccgacatcgtgtcagga |
200 |
Q |
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| T |
37320888 |
tgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcagga |
37320789 |
T |
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| Q |
201 |
ccaaaacc |
208 |
Q |
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| T |
37320788 |
ccaaaacc |
37320781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 37317412 - 37317202
Alignment:
| Q |
1 |
ttctttgttcattcacatcaaccagtgcaaaattctcatcatgttccacaa---ttctcatttctttgaaccttactttcgtctccataatatcccttgc |
97 |
Q |
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| T |
37317412 |
ttctttgttcattcgcatcaaccatggcaaaatcctcaacattctccataactcttctaatttctttgaaccttactttcctctctataatatcccttgc |
37317313 |
T |
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| Q |
98 |
cactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcccgacatcgtgtca |
197 |
Q |
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| T |
37317312 |
cactgccactaattactatcaaaacctatccccaacaatgttgggttttcaagaagagaaattcactcaccttcacttttactttcacgacatcgtgtca |
37317213 |
T |
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| Q |
198 |
ggaccaaaacc |
208 |
Q |
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| T |
37317212 |
ggaccaaaacc |
37317202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 52 - 208
Target Start/End: Complemental strand, 37324918 - 37324762
Alignment:
| Q |
52 |
ttctcatttctttgaaccttactttcgtctccataatatcccttgccactgccactaattactataaaagcctatccccaacaatgctgggttttcaaga |
151 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
37324918 |
ttctaatttctttgaaccttactttcctctccataatatcccttaccacggccactaattactatcaaagcctatctccaacaatgctgggttttcaaga |
37324819 |
T |
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| Q |
152 |
agagaaattcactcaccttcatttttactttcccgacatcgtgtcaggaccaaaacc |
208 |
Q |
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| T |
37324818 |
agagaaattcactcaccttcacttttactttcatgacattgtgtcgggaccaaaacc |
37324762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 37306978 - 37306893
Alignment:
| Q |
87 |
atatcccttgccactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttca |
172 |
Q |
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|||||||| || || ||||| |||||||| |||||| |||| ||| | || ||||||||||||||||||||||||| |||||||| |
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| T |
37306978 |
atatccctggctacagccaccaattactacaaaagcttatctccagctttgttgggttttcaagaagagaaattcacccaccttca |
37306893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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