View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_10 (Length: 552)
Name: NF12891_low_10
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 3923375 - 3922851
Alignment:
| Q |
18 |
cctctcgaatatagtagcgactttaggccttcatcaagagatcattggccaccaagcattggtgttttggaacttggaatcttaaaagcaactaatttga |
117 |
Q |
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| T |
3923375 |
cctctcgaatatagtagtgactttaggccttcatcaagagatcattggccaccaagcattggtgttttggaacttggaatcttaaaagcaactaatttga |
3923276 |
T |
|
| Q |
118 |
tgccaatgaagattggggggagaaccgatgcatattgtgtggcgaaatatggaccaaaatgggtaaggacaagaaccagtgttgacagccgtgaaccaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3923275 |
tgccaatgaagattggggggagaaccgatgcatattgtgtggcgaaatatggaccaaaatgggtaaggacaagaacaagtgttgacagccgtgaaccaag |
3923176 |
T |
|
| Q |
218 |
atggaatgagcaatatgtttgggaagtttatgagccattcacagtcattactattggagtttttgatgacaatcagttagatcctgaaagtagagccaga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3923175 |
atggaatgagcaatatgtttgggaagtttatgagccattcacagtcattactattggagtttttgataacaatcagttagatcctgaaagtagagccaga |
3923076 |
T |
|
| Q |
318 |
ggtgcaagagatactataatggctaagataaggattcgtctatcaacacttgaaaacggcaaagtgtatgcacattcttaccctcttataggtttacatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923075 |
ggtgcaagagatactataatggctaagataaggattcgtctatcaacacttgaaaacggcaaagtgtatgcacattcttaccctcttataggtttacatc |
3922976 |
T |
|
| Q |
418 |
cctctggtgtaactaagatgggtgaaatccatttggcagtgaagtttacttggacatctcagtctacatttacttttccatttgagtctatatttaataa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3922975 |
cctctggtgtaactaagatgggtgaaatccatttggcagtgaagtttacttggacatctcagtctacatttacttttccatttgagtctatatttaataa |
3922876 |
T |
|
| Q |
518 |
gtgtgcattatacggcagacctttg |
542 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3922875 |
gtgtgcattatacggcagacctttg |
3922851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 27253757 - 27253646
Alignment:
| Q |
139 |
gaaccgatgcatattgtgtggcgaaatatggaccaaaatgggtaaggacaagaaccagtgttgacagccgtgaaccaagatggaatgagcaatatgtttg |
238 |
Q |
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||||||| ||||||||||| || || ||||| | |||||||| || ||||| || | |||||| || | | |||||| ||||||||||||||| ||| |
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| T |
27253757 |
gaaccgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatagtctttcaccaaggtggaatgagcaatatacttg |
27253658 |
T |
|
| Q |
239 |
ggaagtttatga |
250 |
Q |
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|||||||||||| |
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| T |
27253657 |
ggaagtttatga |
27253646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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