View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_104 (Length: 205)
Name: NF12891_low_104
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_104 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48596682 - 48596886
Alignment:
| Q |
1 |
tgtcaatgtccctatgaatatgataattgattcagttccagttgcacatcatcaccgcggaggcaatgttaatactagcggaaaacggttgagactattt |
100 |
Q |
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| T |
48596682 |
tgtcaatgtccctatgaatatgataattgattcagttccagttgcacatcatcacctcggaggcaatgttaatactggcggaaaacggttgagactattt |
48596781 |
T |
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| Q |
101 |
ggggttaacatggaatgtgattcttcttcttcttcagaaccaccacaagtgacaacaacttctggggatcatgatcatcatcacagagggggaacttcac |
200 |
Q |
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| T |
48596782 |
ggggttaacatggaatgtgattcttcttcttcttcagaaccaccacaagtgacaacaacttctggggatcatgatcatcatcacagagggggaacttcac |
48596881 |
T |
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| Q |
201 |
tgcac |
205 |
Q |
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||||| |
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| T |
48596882 |
tgcac |
48596886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 44950824 - 44950720
Alignment:
| Q |
26 |
attgattcagttccagttgcacatcatcaccgcggaggcaatgttaatactagcggaaaacggttgagactatttggggttaacatggaatgtgattctt |
125 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| | |||| ||||||||||||| |
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| T |
44950824 |
attgattcagtgccagttgcacatcatcaccgcggatgcaatgttaatactagcggaaaagggctgagactatttgggttcgacatagaatgtgattctt |
44950725 |
T |
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| Q |
126 |
cttct |
130 |
Q |
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| T |
44950724 |
cttct |
44950720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 44950683 - 44950647
Alignment:
| Q |
153 |
caacaacttctggggatcatgatcatcatcacagagg |
189 |
Q |
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| T |
44950683 |
caacaacttctggggatcatcatcatcatcacagagg |
44950647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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