View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_11 (Length: 549)
Name: NF12891_low_11
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 31734742 - 31735017
Alignment:
| Q |
5 |
gaggaggagcagagactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaagg |
104 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
31734742 |
gaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgttgatggtttgcaagg |
31734841 |
T |
|
| Q |
105 |
aagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccata |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734842 |
aagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccata |
31734941 |
T |
|
| Q |
205 |
gaaaatactctaatgttaagaatatgtttgtgtttaagccatgttatcaccagagtccagctagtaaggtttaatggaaatcc |
287 |
Q |
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| T |
31734942 |
gaaaatactctaatgttaagaatatgtttgtgtttaagccatgttatcaccaga-------tagtaaggtttaatggaaatcc |
31735017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 354 - 531
Target Start/End: Original strand, 31735321 - 31735498
Alignment:
| Q |
354 |
actggcccttcatattctccttattttatcttcatttcactttagtttattctcttttgcttatctttctttcataactcaaacaaagtcttaatgaaat |
453 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31735321 |
actggcccttcatgttctccttattttatcttcatttaactttagtttattctcttttgcttatctttctttcataactcaaacaaagtcttaatgaaat |
31735420 |
T |
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| Q |
454 |
tgtagtggatattgcatgactggaatgacaaagaatgtgtgaagatattaaagaattgtaaggatgcaatatcaaaga |
531 |
Q |
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| T |
31735421 |
tgtagtggatattgcatgactggaatgacgaagaatgtgtgaagatattaaagaattgtaaggatgcaatatcaaaga |
31735498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 31684363 - 31684539
Alignment:
| Q |
5 |
gaggaggagcagagactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaagg |
104 |
Q |
| |
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||||||| ||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31684363 |
gaggaggtacagggaccatggcaaaaactcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgctagg |
31684462 |
T |
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| Q |
105 |
aagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaa |
181 |
Q |
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| T |
31684463 |
aagtgaaaacttaaactatgttggtggagacatgtttaaagaaattccgccaacagctgcaattttgttgaaggtaa |
31684539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 31711353 - 31711513
Alignment:
| Q |
22 |
atggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagct |
121 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| | |
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| T |
31711353 |
atggcaaagactcttgtcaaatcattcccacaaatggagtgcattgtgtttgatcttccacatgttgttgatggcttgcaaggaagtgaaaagctaagat |
31711452 |
T |
|
| Q |
122 |
atgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaa |
182 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||| | ||||||||| ||||||||||||| |
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| T |
31711453 |
atgttggtggagacatgtttaaggaaattccaccagcagatgcaattttgttgaaggtaaa |
31711513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 363 - 531
Target Start/End: Original strand, 31712382 - 31712552
Alignment:
| Q |
363 |
tcatattctccttat--tttatcttcatttcactttagtttattctcttttgcttatctttctttcataactcaaacaaagtcttaatgaaattgtagtg |
460 |
Q |
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||||||||||||||| ||||||||| |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31712382 |
tcatattctccttatactttatcttcttttcacattaggttattctcttttgtttatctttctttcataactcaaacaaagtcttaatgaaattgcagtg |
31712481 |
T |
|
| Q |
461 |
gatattgcatgactggaatgacaaagaatgtgtgaagatattaaagaattgtaaggatgcaatatcaaaga |
531 |
Q |
| |
|
|||||||||||| ||||| ||| | ||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
31712482 |
gatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaaga |
31712552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 31702919 - 31703079
Alignment:
| Q |
22 |
atggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagct |
121 |
Q |
| |
|
||||||||| | |||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||||||||||||| || |
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| T |
31702919 |
atggcaaaggcccttgctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgttgttgatggcttgcaaggtagtgagaatctaaact |
31703018 |
T |
|
| Q |
122 |
atgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaa |
182 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| || || ||| ||||||||||||| |
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| T |
31703019 |
atgttggtggagacatgtttaaagaaattcctccaacagacgccattttgttgaaggtaaa |
31703079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 390 - 531
Target Start/End: Original strand, 31684686 - 31684827
Alignment:
| Q |
390 |
tcactttagtttattctcttttgcttatctttctttcataactcaaacaaagtcttaatgaaattgtagtggatattgcatgactggaatgacaaagaat |
489 |
Q |
| |
|
|||||||||| | ||||||||| |||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||| | |||| |
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| T |
31684686 |
tcactttagtgtgttctcttttctctatccttctttcataactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacgaggaat |
31684785 |
T |
|
| Q |
490 |
gtgtgaagatattaaagaattgtaaggatgcaatatcaaaga |
531 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31684786 |
gtgtaaagatattaaagaattgtaaggatgcaatatcaaaga |
31684827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 31714305 - 31714484
Alignment:
| Q |
5 |
gaggaggagcagagactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaagg |
104 |
Q |
| |
|
||||||| ||| ||| ||||||||| || |||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
31714305 |
gaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaattagagtgcactgtgtttgatcttccacatgttgttgatggcttgcaagg |
31714404 |
T |
|
| Q |
105 |
aagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagt |
184 |
Q |
| |
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| |||| || ||| ||||||||||||||| |||||||| |||||| ||| | ||||| ||| ||||||||||||||| |
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| T |
31714405 |
aggtgataacttaaactatgttggtggagatatgtttaagagaattcctccagctgatgctattttgttgaaggtaaagt |
31714484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 369 - 531
Target Start/End: Original strand, 31703980 - 31704142
Alignment:
| Q |
369 |
tctccttattttatcttcatttcactttagtttattctcttttg-ct-tatctttctttcataactcaaacaaagtcttaatgaaattgtagtggatatt |
466 |
Q |
| |
|
|||||||||||| |||| ||||||||||| || ||| |||||| || ||| ||||||| |||||||| | |||||| ||| |||||| |||||||||| |
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| T |
31703980 |
tctccttattttgtcttaatttcactttactt-attttcttttatctatatgtttctttagtaactcaatcgaagtct-aataaaattgcagtggatatt |
31704077 |
T |
|
| Q |
467 |
gcatgactggaatgacaaagaatgtgtgaagatattaaagaattgtaaggatgcaatatcaaaga |
531 |
Q |
| |
|
|||||| ||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
31704078 |
gcatgattggaatgacgaggaatgtgtgaaaatattaaagaattgcaaggatgcaatatcaaaga |
31704142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 457 - 524
Target Start/End: Original strand, 31715405 - 31715472
Alignment:
| Q |
457 |
agtggatattgcatgactggaatgacaaagaatgtgtgaagatattaaagaattgtaaggatgcaata |
524 |
Q |
| |
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|||||||||||||||| |||||||| | ||||| || |||||||||| ||||||||||||||||||| |
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| T |
31715405 |
agtggatattgcatgattggaatgatgaggaatgcgtaaagatattaaggaattgtaaggatgcaata |
31715472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 30570360 - 30570458
Alignment:
| Q |
43 |
tcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgttt |
141 |
Q |
| |
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||||||||| | || |||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||| |||||||| || ||||||||| |
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| T |
30570360 |
tcattcccaaacattgagtgcattgtatttgatcttccacatgttgttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgttt |
30570458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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