View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_13 (Length: 508)
Name: NF12891_low_13
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 52471984 - 52471832
Alignment:
| Q |
1 |
tctcccaatgttgggcttccaagggcctcaatccaacacttggaccatatcctgaaccttcatttctaacacagatccttggctgtcaacgttgtttaat |
100 |
Q |
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| T |
52471984 |
tctcccaatgttgggcttccaagggcctcaatccaacacttggaccattgtgttctccttcatttctaacacagatccttggctttcaacattgtttaat |
52471885 |
T |
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| Q |
101 |
ttatgggataccaaaaggtaaccattagaagactcttttgcatttacggtcca |
153 |
Q |
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| T |
52471884 |
ttatgggataccaaaaggtaacctttagaagactcttttgcatttacggtcca |
52471832 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 41485559 - 41485478
Alignment:
| Q |
250 |
aataacgtcttacatgaactagaacttgattaatggcttcaattaccttccgctgttgtacttttactaactttttcagcaat |
332 |
Q |
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| T |
41485559 |
aataaagtcttatatgaactaaaccttaattaatggattcaattacctttccc-gtgttacttttactaactttttcagcaat |
41485478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 38793987 - 38794036
Alignment:
| Q |
86 |
tcaacgttgtttaatttatgggataccaaaaggtaaccattagaagactc |
135 |
Q |
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| T |
38793987 |
tcaacattgattgatttatgcgataccaaaaggtaaccattagaggactc |
38794036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 41483361 - 41483324
Alignment:
| Q |
371 |
caatcacatcatgcataatggcctacaaaagtaaaata |
408 |
Q |
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| T |
41483361 |
caatcacatcatgcaaaacggcctacaaaagtaaaata |
41483324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 12024507 - 12024582
Alignment:
| Q |
272 |
aacttgattaatggcttcaattaccttccgctgttgtacttttactaactttttcagcaatcatcaccaaatcctca |
348 |
Q |
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| T |
12024507 |
aacttgatgaatggtttcaattaccttcctcttgt-tacttttactaactttttcaccaactatcactaaatcctca |
12024582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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