View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_14 (Length: 503)
Name: NF12891_low_14
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_14 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 103 - 487
Target Start/End: Original strand, 16455834 - 16456217
Alignment:
| Q |
103 |
actgttggagatgtatataaaatgtggaataaaacagtaacaatatcaatgaaatagtgaagaaaaagattgtaattgtattaatggtgatgaacaatta |
202 |
Q |
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| T |
16455834 |
actgttggagatgtatataaaatgtg-aataaaacagtaacaatatcaatgaaatagtgaagaaaaagattgtaattgtattaatggtgatgaacaatta |
16455932 |
T |
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| Q |
203 |
caagagaaataaggagtaacaaactgatagtgagatactatcagtccctgatagcacgcagtgctcccaaatcactaacaaagtgaccccacagaataac |
302 |
Q |
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| T |
16455933 |
caagagaaataaggagtaacaaactgatagtgagatactatcagtccctgatagcacgcagtgctcccaaatcactaacaaagtgaccccacagaataac |
16456032 |
T |
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| Q |
303 |
agaatacttagctacctattctctgacttactattacttatatagctactaaaactcatgcatcccatacaccaacactgccacctcatcattccttccc |
402 |
Q |
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| T |
16456033 |
agaatacttagctacctattctctgacttactattacttatatagctactaaaactcatgcatcccatacaccaacactgccacctcatcattccttccc |
16456132 |
T |
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| Q |
403 |
ttttcctcttttcctagtataaactctccatatcttaggtttgggcccatagtcacagcccatttcctcattcacattcctatca |
487 |
Q |
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| T |
16456133 |
ttttcctcttttcctagtataaactctccatatcttaggtttgggcccatagtcacagcccatttcctcattcacattcctatca |
16456217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 108 - 487
Target Start/End: Original strand, 620831 - 621217
Alignment:
| Q |
108 |
tggagatgtatataaaatgtggaataaaacagtaacaatatcaatgaaatagtgaagaaaaagattgtaattgtattaatggtgatgaacaattacaaga |
207 |
Q |
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| T |
620831 |
tggagatgtatatgaaattgtgaataaaacagtaacaattttaatgtaaaaatggtgaaa--gcttgtaattgtatcaatggtgatgaacaattacaaga |
620928 |
T |
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| Q |
208 |
gaaataagga--------gtaacaaactgatagtgagatactatcagtccctgatagcacgcagtgctcccaaatcactaacaaagtgaccccacagaat |
299 |
Q |
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| T |
620929 |
gaaataagggacaaaagcgtaacaaactgatagtgagatactatcaatccctcatagcacgcagtgctcccaaatcactaacaaagagaccccacagaat |
621028 |
T |
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| Q |
300 |
aacagaatacttagctacct-attctctgacttactattacttatatagctactaaaactcatgcatcccatacaccaacactgccacctcatcattcct |
398 |
Q |
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| T |
621029 |
aacagaatacttagctaccttattctctgacttactattacttatatagttaacaaaactcatgcatcacatgcaccgaaactgacacctcatcattcct |
621128 |
T |
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| Q |
399 |
tcccttttcctcttttcctagtataaactctccatatcttaggtttgggcccatagtcacagcccatttcctcattcacattcctatca |
487 |
Q |
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| T |
621129 |
ttccttttcctcttttcctagtgtagactctccatatcttaggtttgggtccatagtcaaggcaaatttccacattcacattcctatca |
621217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 114743 - 114830
Alignment:
| Q |
18 |
tgtagttctatgttgaaactcaacacaagaaggtcttttattattaatatttacttttcaataaaacttaatttaatgtgttgtaact |
105 |
Q |
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| T |
114743 |
tgtagttctatgttgaaactcaacacaagaaggtcttttattattaatatttacttttcaataaaacttaatttaatgtgttgtaact |
114830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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