View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12891_low_15 (Length: 490)
Name: NF12891_low_15
Description: NF12891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12891_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 473953 - 474215
Alignment:
| Q |
17 |
aaaaaatttgttagtgtaacgaagaagacattcttcataccaaataatagcttctgtttgatttgtacaacgtcgtttgatctgtgtagccgcgtcagta |
116 |
Q |
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| T |
473953 |
aaaaaatttgttagtgtaacgaagaagacattcttcataccaaataatagcttctgtttgatttgtacaacgtcgtttgatctgtgtagccgcgtcagta |
474052 |
T |
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| Q |
117 |
acacagttttgacaagttgttgtgttgacatcaccacgacagagaaagattccgttaacagcgttggttgttccaaaacccatgatggtcatgtagtaac |
216 |
Q |
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| T |
474053 |
acacagttttgacaagttgttgtgttgacatcaccacgacagagaaagattccgttaacagcgttggttgttccaaaacccatgatggtcatgtagtaac |
474152 |
T |
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| Q |
217 |
catcttgttgttgagaagagttgggtgaaagagaattgaggaggacattgaggtttgtagata |
279 |
Q |
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| T |
474153 |
catcttgttgttgagaagagttggttgaaagagaattgaggaggacattgaggtttgtagata |
474215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 315 - 473
Target Start/End: Original strand, 474251 - 474429
Alignment:
| Q |
315 |
cagtaagagcctagatatgttggagatgcttctgttgctaataataaggttagatagaggatggaaactacgtac---------------gaggtagtag |
399 |
Q |
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| T |
474251 |
cagtaagagcctagatatgttggagatgcttctgttgc---taataaggttagatagaggatggaaactacgtacgaccagatttgttttgaggaagtag |
474347 |
T |
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| Q |
400 |
tactcattatatt--------gttttcttttgtatgatcaataaattaaactacaatattttctttctatgggatcatgatg |
473 |
Q |
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| T |
474348 |
taatcattatattatattgtagttttcttttgtatgatcaataaattaaactacaatattttctttctatgggatcatgatg |
474429 |
T |
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